Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g2242 ATGGTGAAATCGGCCGATAATGGTTCTGGTTCTGTGCCGCCGTTCCTGAAGAAGTGTTATGAGATGGTGGACGATGAGTCTACGGACTCGCTCATTTCTTGGAGCAAAAGCAGTGACAGTTTTGTCATATGGAACATGACTGAATTCTCCGTGTGTTTGCTTCCCAAGTATTTCAAGCATAACAATTTCTCCAGCTTCATCAGGCAACTCAATATTTATGGTTTCAGGAAAACTGATACAGATCGCTGGGAATTTGCCAATGATAACTTTGTCAGAGGTCAAAAGCATTTACTGAAGAATATATGTAGAAGAAAACATCCGCTCGTTGCAGATCATCAAAAACCATTACAGCAGCAAGACAACTGTGATGTACCTTCTCAAGAAGTTAAAAACCATGGCCTGTGGAAAGAAGTTGAGAATCTCAAAACTGATAAAAATGCACTCACGCAGGAGTTGGTTAAACTTAGGCAGCACCTGGAATCATCTCAGAACAAATTGCTGCTCCTGACAGATCGTCTTCAAGGAATGGAAAAGAATCAGCAACAGATGTTATCCTTCTTAGTCATGGCCATGCAAATCCCTGGTTTCATGGTTCAGCTGCTTCAGCCCAAGGAAAACAATTGGCACATGACTGAAGCAGGCAATATGTTGGAACACAGTAAACAAGATGATCAATCCGTTCCTTCTGAGGGGATGATAATGAAGTATCAACCACCCTTAAGCAAAAAATTGAAGCCTGTAGTTACACCATCTTGTGTTTCAGATGAGCTACCAGAACCTGATCTCTGTGCTGATGGGTTGAAAGATTATTTAGTCAATTCCGACTTCTTGAAAGTACTTATGGATGAAAAATTGTGTCAATTCGATCATCATTCTCCCTTTATTCTAGCAGATTTACCCGATGATGGTGCCTGGGAGCAGCTTCTTTTAGGTAGTCCCTTCTCGGAAAATGCTGAAGATTCGAATCTGGAAAGTGACAAGCCCACCAAAAATGGAATGGAGATTGAGCCTACTGTATACGAAACACTGAATGAGAAATCCCAAAATTTTGGTGGGTTGATTCCAGAAATGGACAAAACTCAAAGGAGTGGATTGGAATTATGCACTAGTAGTGTTCATTTGGAGAAGCTGCAGAGTTTGGAATCTCTAACTGAGCAAATGGAACTTCTGGCTTCCGAGGCAAATGAGAAATAG 1194 0.4137 MVKSADNGSGSVPPFLKKCYEMVDDESTDSLISWSKSSDSFVIWNMTEFSVCLLPKYFKHNNFSSFIRQLNIYGFRKTDTDRWEFANDNFVRGQKHLLKNICRRKHPLVADHQKPLQQQDNCDVPSQEVKNHGLWKEVENLKTDKNALTQELVKLRQHLESSQNKLLLLTDRLQGMEKNQQQMLSFLVMAMQIPGFMVQLLQPKENNWHMTEAGNMLEHSKQDDQSVPSEGMIMKYQPPLSKKLKPVVTPSCVSDELPEPDLCADGLKDYLVNSDFLKVLMDEKLCQFDHHSPFILADLPDDGAWEQLLLGSPFSENAEDSNLESDKPTKNGMEIEPTVYETLNEKSQNFGGLIPEMDKTQRSGLELCTSSVHLEKLQSLESLTEQMELLASEANEK 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g2242 397 Pfam HSF-type DNA-binding 15 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere09g2242 397 PRINTS Heat shock factor (HSF) domain signature 53 65 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere09g2242 397 PRINTS Heat shock factor (HSF) domain signature 15 38 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere09g2242 397 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere09g2242 397 Gene3D - 8 105 IPR036388 -
Dere09g2242 397 Coils Coil 377 397 - -
Dere09g2242 397 FunFam Heat shock transcription factor 1 8 105 - -
Dere09g2242 397 SUPERFAMILY "Winged helix" DNA-binding domain 11 104 IPR036390 -
Dere09g2242 397 SMART hsfneu3 11 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere09g2242 397 Coils Coil 138 179 - -
Dere09g2242 397 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 9 225 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g2242 Dere-ChrDere09 32562433 32566156 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g2242 1 392 HSF AT1G67970 46.699 1.04e-98 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Dere09g2242 HSF_DNA-bind 3.2e-31 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g2242 09 32562433 32566156 Dere09g2242 09 32562433 32566156 ECH