Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g2230 ATGAGCTTACCCCAAGCACTCAGAAAGTGGCAATTTCTGAAAGGAAAGGGCACAACAGTGGATGGATTAGAGCTTGCAACGACAGGGCTCGAGATGGGTGAGGAGGTTAAGGCTATCGTTCCAGAGTCTGTGTTGAAGAAGCAGAAGAGGGAAGAAGAATGGGCATTGGCTAAAACACAGGAGCTTGAAGCTGCCAAGAAGAAGAGAGCTGAGAGCCGTAAGCTGATTTACAACAGAGCTAAGCAGTACGCCCAGGAGTATGAGGAGCATGAAAAGGAATTGATTAGATTGAAGCGTGAGGCAAAGCTGAAAGGTGGATTTTATGTTGATCCAGAGGCTAAACTTTTATTTATTATTCGCATTCGTGGTATTAATGCCATGCACCCAAAGACAAGAAAGATCTTGCAGCTCTTGCGATTGAGACAGATCTTCAATGGTGTATTTCTTAAAGTTAACAAGGCCACAATGAACATGCTTCACAGAGTTGAACCCTATGTGACTTATGGATACCCAAATCTGAAGAGTGTTAGAGAACTCATCTACAAGAGGGGTTATGGTAAGCTCGACAAGCAGAGAATTGCTCTAACTGACAACTCCATCATTGAGCAGGCTCTGGGAAAGTACGGAATCATATGCACTGAGGATCTTATCCATGAGATCATGACAGTTGGACCCCATTTTAAGGAAGCCAACAACTTCCTTTGGCCATTTAAGCTCAAGGCACCTTTGGGTGGACTAAAGAAGAAGAGAAACCACTATGTTGAAGGAGGTGATGCTGGAAACCGGGAGAATTACATCAATGAGCTCATCAGGAGAATGAACTAG 825 0.44 MSLPQALRKWQFLKGKGTTVDGLELATTGLEMGEEVKAIVPESVLKKQKREEEWALAKTQELEAAKKKRAESRKLIYNRAKQYAQEYEEHEKELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEQALGKYGIICTEDLIHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g2230 274 NCBIfam 60S ribosomal protein uL30 41 274 IPR005998 GO:0000463|GO:0003735|GO:0022625
Dere09g2230 274 Coils Coil 73 104 - -
Dere09g2230 274 ProSitePatterns Ribosomal protein L30 signature. 134 166 IPR018038 -
Dere09g2230 274 Pfam Ribosomal protein L30p/L7e 116 166 IPR016082 -
Dere09g2230 274 PANTHER 60S RIBOSOMAL PROTEIN L7 38 274 IPR039699 -
Dere09g2230 274 CDD Ribosomal_L7_archeal_euk 115 274 IPR035808 -
Dere09g2230 274 SUPERFAMILY Ribosomal protein L30p/L7e 115 274 IPR036919 -
Dere09g2230 274 Gene3D - 115 274 IPR036919 -
Dere09g2230 274 FunFam 60S ribosomal protein L7 115 219 - -
Dere09g2230 274 Pfam Ribosomal L30 N-terminal domain 40 111 IPR012988 -
Dere09g2230 274 FunFam 60S ribosomal protein L7 220 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g2230 Dere-ChrDere09 32350501 32358297 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g2230 35 274 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 85.833 7.90e-156 432