Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g2215 ATGGAGGGCTTTCTGGGTACTCTCAAAATTCGTGTCAAAAAAGGAGTTAACCTTGCCATTCGCGATAGCCGTACCAGTGACCCTTACGTTGTCATCAACATGTGCGAACAGAAACTGAGGACTAAAGTTGTGGAAGATGACTGCAATCCTGAGTGGAATGAAGAATTGACACTGTATATGAAGAAAGTCGATGCTCCAATTTTTATAAAAGTTTTTGACAAAGACACTTTCACAGAGGATGACCCAATGGGGGAAGCAGAGATAGACATAAAGCCATTGCTTGAGTGTGTGAAGATGAACTTGACTGATTTCCCAAATGGCTGTGTATTGAAGAAAGTTCCACCCAGCAGAAACAACTGCCTTTCCGAGGAGAGCTGGTGCACATGGAATGACGGAAAAATCACCCAAACAATGTTTCTAAGATTGAGGAAAGTTGAGAGTGGCGAATTACTCCTGGAATTAGAGTGGAATGATGAAGGTTATTTGGGATTATCAAGTGTCGAGTTATAA 510 0.4176 MEGFLGTLKIRVKKGVNLAIRDSRTSDPYVVINMCEQKLRTKVVEDDCNPEWNEELTLYMKKVDAPIFIKVFDKDTFTEDDPMGEAEIDIKPLLECVKMNLTDFPNGCVLKKVPPSRNNCLSEESWCTWNDGKITQTMFLRLRKVESGELLLELEWNDEGYLGLSSVEL 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g2215 169 Gene3D C2 domain 5 161 IPR035892 -
Dere09g2215 169 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Dere09g2215 169 SMART C2_3c 7 102 IPR000008 -
Dere09g2215 169 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 5 158 IPR044562 -
Dere09g2215 169 Pfam C2 domain 6 94 IPR000008 -
Dere09g2215 169 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 4 100 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g2215 Dere-ChrDere09 32001878 32006685 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g2215 38 158 C2H2 Transcription Factor Family AT1G70790 55.285 3.75e-44 141
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g2215 09 32001878 32006685 Dere09g2215 09 32001878 32006685 ECH
Dere09g2215 09 32001878 32006685 Dere05g1045 05 16803483 16806737 ECH