Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g2176 ATGGACGACGAAGTTGTTCAGCGTGTCTTCCATGAAGGAGGCCGCGATTACTTCCAGCAACAGCCTTCAACTTCCTCATCTTCCTCCTCCATCCTTCAATCTCTCCCTCTCCATGTGTCCTTTGATCATGGCTATTATTTGTTAGTCAAATCTATCCAAGAACTCCGCGAGAAAAAAGAGGGTCTTGTTACAGTTGGCATTGGTGGTCCTAGTGGTTCTGGTAAAACAAGCTTAGCAGAAAAGGTGGCATCTGTTATTGGTTGTACTGTTATATCGATGGAGAATTATCGCGATGGAGTTGATGAAGGGAATGATTTGGATTCTATAGACTTTAATACCCTGGTGAAGAATCTTGAGGATTTGACAAATGGTGATGATACACTAATTCCAGTGTTTGACTATCAACAAAAGCGACGTGTTGGATATAAAGCAATAAAGAGTGCTTCATCAGGGGTGGTCGTAGTTGATGGTACATATGCTCTGCATGCAAAACTGCGGTCTTTGTTAGATATTCGAGTTGCTGTGGTTGGTGGTGTTCATTTTAGCTTGCTTTCTAAAGTTCGGTATGATATTGGAGATTCTTGTTCACTGGATTACCTTATTGACAGCATTTTCCCATTGTTTCGGAAGCATATTGAGCCAGATCTTCATCATGCGCAGATCAGAATTAATAACAGCTTTGTCTCGTCATTTAGAGAAGCCATCTACAAGGTGAAGTGCAGAAGTGAGTCTCCTGATAGACATTTGGGTTCTGCTTTTCAACAAGATGAAGCCCAAACAGACAATTTTATAGAGATGTACCTTAGACCTCCCTCGGCTAGTGAAGAAGCAAGGATAAATGATTGGATCAAGGTGCGGCAGTCTGGAATTAGATATTATCTATCACTTGGTGACCAGAGGATTGTTGACAAAAATTTCATTATCAGGCCTAAGGCTGAGTTTGAGGTTGGACGAATGACATTGGGGGGATTGTTGGCTTTGGGCTACTCTGTTGTTGTTAGTTATAAACGTGCATCTACAACAGTCAGTAATGGCAATGTTTCTATGTCCTTTGAAACCATTGATGCTCTTGGTGAGACATACATGGTGCTGAGAGGAACAAATAGGAAAATAGTTGGCACAGAAGCATTAAAGATGGGTGTAAGTGGCCCTTGGATCACTAAATCATATCTGGAAATGATCCTTGAGAGAAAAGGCGTACCTCGTCTCAGTACACCACCACTTGTGTCTAATACACCTATCCTTGGTAATCAAGAAAGATCAATCATTGCACCAAAGCCAATCCGAGTTACTCCTGACCTTGTAACTGGGCTTGAGGATTTATCTCAGCCATGGACACGATCCCCAAGAAAATCTAAAATGGAACCTGTCGTAGCAACTTGGCATTTCGTATCTTCAGATTCATCTCAGCCTGACAACTCAGTACCAGATCCTTCATCTTGCAGGGATGCCATGAGGCTTGCTCCGATGCCTGATTCATATGACTTGGATAGGGGATTGCTTTTGGCTGTTCAAGCAATACAAGCTTTGTTGGAGAATAAAGGTGTTCCAGTCATAGTCGGAATTGGAGGTCCTAGTGGATCTGGAAAGACTAGTTTGGCCCTCAAAATGGCAAATATCATTGGATGTGAAGTAGTTTCTTTGGAAAGCTATTATAAGCGAGTAAAGGATTTTAAATATGATAACTACAGCTCACTTGATCTGTCTTTGCTATCAAAGAATATTGATGACATAAGAAATGGTCGAAGAACAAGAGTGCCTATATTTGACTTGGAAAGTGGTGCTCGTAGTGGCTTCAAGGAGCTTGAAGTTTCTGAAGATTGTGGAGTGATTATATTTGAAGGGGTTTATGCTTTGCACCCTGATATCCGAAAATCTCTTGACTTGTGGATTGCTGTTGTAGGTGGTGTTCATTCGCATTTGATTTCTCGAGTTCAAAGGGATAAGAGTAGAGTGGGATGTTTTATGTCCCAAAATGAGATTATGATGACAGTATTTCCTATGTTCCAGCTGCACATTGAACCACATCTTGTTCATGCACATCTTAAGATAAGAAATGACTTTGACCCTGTCCTTTCCCCTGAGAGTTCATTGTTTGTATTGAAGAGTAACAAAAAAGTAGCTTATCAAGATATTCTTACGATTCTTGATCCAGCAAAATTTTGCAGTTCAGTTCAAAAGTTCATTGATATATATTTAAAGCTTCCTGGGATCCCCTCTAATGGACAGTTGACAGAGGGTGATTGTATTCGAGTTAGAATATGTGAAGGAAAATTTGCTTTGTTGATACGTGAGCCTATTAGAGAAGGAAACTTCATCATTCAGCCTAAAGTGGATTTTGACATTAGCGTTAGTACAGTTGCTGGTCTTCTAAATCTTGGGTATCAGGCAGTAGCTTATATTGAAGCATCTGCGTTCATATACCAGGATGGCAAGATTCTAATTGAGGTTGACCATCTACAAGATGTCTCAGGTCCATACATTCAGATTAAGGGTGTTGATAAAGATGCTGTGGCAGCAGCAGGTTCAATGCTTAAATTGGATGGTTCATATACTACTAAAAGTTATCTTCAAATAATTTTGGAAAGACTACCAGCACTAGAAAGAACTTTTGGTGGGATTCACTCTCGGCAGTCAGCCAGGCTGCAAGAAATTGTTGAGTTTATTCAATCTAAGGGAAGTAGCTTAGCATCAGAATGCTCACCAAGCAGGGTGGCGTCTCCAATTGATGGGATTATCTTGGAGATGCAATCGAAAATTAGAAGGCTTGAACGGTGGCTTACTGTGAATACGGTTTTATGGACATTTCTGATGTCTGCCCTTGTTGGTTATTCGCTCTATCAAAGGAAGCGTCAGTGA 2859 0.4078 MDDEVVQRVFHEGGRDYFQQQPSTSSSSSSILQSLPLHVSFDHGYYLLVKSIQELREKKEGLVTVGIGGPSGSGKTSLAEKVASVIGCTVISMENYRDGVDEGNDLDSIDFNTLVKNLEDLTNGDDTLIPVFDYQQKRRVGYKAIKSASSGVVVVDGTYALHAKLRSLLDIRVAVVGGVHFSLLSKVRYDIGDSCSLDYLIDSIFPLFRKHIEPDLHHAQIRINNSFVSSFREAIYKVKCRSESPDRHLGSAFQQDEAQTDNFIEMYLRPPSASEEARINDWIKVRQSGIRYYLSLGDQRIVDKNFIIRPKAEFEVGRMTLGGLLALGYSVVVSYKRASTTVSNGNVSMSFETIDALGETYMVLRGTNRKIVGTEALKMGVSGPWITKSYLEMILERKGVPRLSTPPLVSNTPILGNQERSIIAPKPIRVTPDLVTGLEDLSQPWTRSPRKSKMEPVVATWHFVSSDSSQPDNSVPDPSSCRDAMRLAPMPDSYDLDRGLLLAVQAIQALLENKGVPVIVGIGGPSGSGKTSLALKMANIIGCEVVSLESYYKRVKDFKYDNYSSLDLSLLSKNIDDIRNGRRTRVPIFDLESGARSGFKELEVSEDCGVIIFEGVYALHPDIRKSLDLWIAVVGGVHSHLISRVQRDKSRVGCFMSQNEIMMTVFPMFQLHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKKVAYQDILTILDPAKFCSSVQKFIDIYLKLPGIPSNGQLTEGDCIRVRICEGKFALLIREPIREGNFIIQPKVDFDISVSTVAGLLNLGYQAVAYIEASAFIYQDGKILIEVDHLQDVSGPYIQIKGVDKDAVAAAGSMLKLDGSYTTKSYLQIILERLPALERTFGGIHSRQSARLQEIVEFIQSKGSSLASECSPSRVASPIDGIILEMQSKIRRLERWLTVNTVLWTFLMSALVGYSLYQRKRQ 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g2176 952 SMART AAA_5 516 660 IPR003593 GO:0016887
Dere09g2176 952 SMART AAA_5 61 211 IPR003593 GO:0016887
Dere09g2176 952 Pfam Phosphoribulokinase / Uridine kinase family 519 684 IPR006083 GO:0005524|GO:0016301
Dere09g2176 952 Pfam Phosphoribulokinase / Uridine kinase family 65 223 IPR006083 GO:0005524|GO:0016301
Dere09g2176 952 Gene3D - 702 864 - -
Dere09g2176 952 CDD UMPK_like 64 226 - -
Dere09g2176 952 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 503 687 IPR027417 -
Dere09g2176 952 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 176 IPR027417 -
Dere09g2176 952 Gene3D - 516 701 IPR027417 -
Dere09g2176 952 Gene3D - 63 242 IPR027417 -
Dere09g2176 952 CDD UMPK_like 519 687 - -
Dere09g2176 952 SUPERFAMILY CYTH-like phosphatases 725 859 IPR033469 -
Dere09g2176 952 PRINTS Uridine kinase signature 517 534 - -
Dere09g2176 952 PRINTS Uridine kinase signature 544 555 - -
Dere09g2176 952 PRINTS Uridine kinase signature 638 648 - -
Dere09g2176 952 PANTHER URIDINE KINASE 495 682 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g2176 Dere-ChrDere09 31135859 31150454 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g2176 512 653 PRT Gene Family AT1G55810 26.623 1.39e-09 59.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g2176 09 31135859 31150454 Dere03g1061 03 16855990 16864906 CCT
Dere09g2176 09 31135859 31150454 Dere09g2176 09 31135859 31150454 ECH