Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g2164 ATGGATGTTGCTAAGAGCAACAACAGCTCTGAACCTTCAACTTCTTACAGTTGTTGCAAAGTTGCAAGTCTCACTAAAACTATACTGGACACAAAGCAGTCTGCAAATTTGAAAGATCGTTACGCTCTTGGTGAGCAGTTAGGTTGGGGACAGTTTGGTGTTATTAGGGCATGCACTGACAAGCTGACTGGAGAGGTTTTGGCCTGCAAATCAATTGCTAAAGATAGATTGGTTACTTCAGATGATCTGCGAAGTGTCAAACTAGAGATTGAGATAATGGCTAGGTTATCAGGGCATCCAGATGTTGTAGATCTCAAGGCAGTTTATGAAGAGGAGGATTTTGTTCATCTGGTGATGGAGCTTTGTGCTGGAGGTGAACTGTTTCACCGGCTGGAGAAGGCTTCGAAAATTGGGGTAAAAGGTCTAGAGTATAAAAACGCTCGTAAACTCCTCAAGTCCACCACGGAGGATTTGAGTCCAGTGGTTGAACAGATCGAACAATACATTAAGGACATGGATAACCCAACTGAAGAAGTGCAGAAGCTGAAGGGGATAATGGCCGCAAGCCAACAGCAACGAAGAGCCATACATTTTGCATGGCTTTCTGGTGCTGGTATTTACCACGGGAGCTTAAATTTTGGAGCACAACATAGTTCTCTAAATGGAGATGAAAATTTTGTTGAGAGCAAGGCTTTATTGGATTACTCAAAATTGTCTGATGGTGCAGAAGAAGTTAAACCAAGTTCTATGGCATTGTCTGAATTTCATTTCTTGCTGCTAACGGGGAATAAGGTCCAGGTGTCTGTCAATGATGAAGGTCGAGATATGTGGAAGGTATATCTTGACATGAAAGAATATGCAGCTGCTTTAGCAAATTGTCACGACCCTCCTCAAAGGGACCAACAAGGAAAAGCAAAAAAAAAAGCATTGGAAGTGCTTCAGAAACCTGCTGTGCCTGTAGACCTTAAGTACAAGTTCACTCCAGACCTTATTTCCCTTGATGCATATGAAACTGTGGAGTCATGGATGGCTACCAAGAACCTGAACCCAAGGAAACTGATTCCTGCAATGATGCATTATTCAAGAGAAACTCATGCTAAGAACGAGACACATGAATGA 1119 0.4245 MDVAKSNNSSEPSTSYSCCKVASLTKTILDTKQSANLKDRYALGEQLGWGQFGVIRACTDKLTGEVLACKSIAKDRLVTSDDLRSVKLEIEIMARLSGHPDVVDLKAVYEEEDFVHLVMELCAGGELFHRLEKASKIGVKGLEYKNARKLLKSTTEDLSPVVEQIEQYIKDMDNPTEEVQKLKGIMAASQQQRRAIHFAWLSGAGIYHGSLNFGAQHSSLNGDENFVESKALLDYSKLSDGAEEVKPSSMALSEFHFLLLTGNKVQVSVNDEGRDMWKVYLDMKEYAAALANCHDPPQRDQQGKAKKKALEVLQKPAVPVDLKYKFTPDLISLDAYETVESWMATKNLNPRKLIPAMMHYSRETHAKNETHE 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g2164 372 ProSiteProfiles Protein kinase domain profile. 41 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere09g2164 372 Pfam Pep3/Vps18/deep orange family 267 301 IPR007810 -
Dere09g2164 372 Pfam Pep3/Vps18/deep orange family 205 267 IPR007810 -
Dere09g2164 372 Gene3D Phosphorylase Kinase; domain 1 43 130 - -
Dere09g2164 372 Pfam Protein kinase domain 41 138 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere09g2164 372 SMART serkin_6 41 201 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere09g2164 372 FunFam Calcium-dependent protein kinase 1 43 126 - -
Dere09g2164 372 PANTHER SERINE/THREONINE-PROTEIN KINASE 25 152 - -
Dere09g2164 372 SUPERFAMILY Protein kinase-like (PK-like) 38 135 IPR011009 -
Dere09g2164 372 ProSitePatterns Protein kinases ATP-binding region signature. 47 74 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g2164 Dere-ChrDere09 30936150 30938240 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g2164 36 131 EF-hand Containing Proteins AT5G12180 54.167 2.33e-29 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Dere09g2164 Pkinase 7.4e-18 CL0016