Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g2161 ATGTCTACCAATGATGAGATCACAAAGATGGAAGAAGGTGAAAATAAACCCAACAGAGAATCTGGGTTTTGTGGATCTCCTTCCACAGTTCAAGTCATACAGAAGGTAATTGCAGAGGCAATTGGGACATACTTCTTGGTATTTGCAGGGTGTTGTGCTGTGACTTTGAACAAAATAGATGGGAGCATCACATTTCCAGGAGTTTGTGTGGTTTGGGGTTTGATTGTAATGGTCATGATTTATTCCGTTGGCCACATCTCCGGAGGCCATTTTAATCCGGCCGTCACCGTCACCTTCGCCATCTTCCGACATTTTCCCTTGAGACAGGTTCCTATGTATCTTATTGCTCAGTTGATAGGATCAATTCTTGCAAGTGGGACATTGTACATAATGTTTGAAGTGGATGAAAAAGCTTATTTTGGAACGTTGCCGTCTGGATCAGATGGTCAATCTCTTGTGATGGAGATCCTCGTTTCTTTCTTGTTGATGTTCGTCATTTCTGCAGTTGCCACAGATAATAGAGCTATTGGAGAATTAGCAGGAATTGCAGTTGGGATGACAATTGCAATAGACCTCTTCATAGCCGGGCCTGTGTCAGGAGCGTCAATGAACCCGGCAAGAAGCATTGGGCCTGCCATTATAATGAACAATTATGACTCAATATGGGTTTACATTGTGGGCCCATTTGTTGGCACCATTGTTGGCGCCTTCGCCTACAGCCTCATCAGATTCACAGACAAACCTCTCAGGGAAATCAGCAAAGCCCCCAGCACTCTCTTCAATAGCGTCTCCACTCGCTAG 801 0.4457 MSTNDEITKMEEGENKPNRESGFCGSPSTVQVIQKVIAEAIGTYFLVFAGCCAVTLNKIDGSITFPGVCVVWGLIVMVMIYSVGHISGGHFNPAVTVTFAIFRHFPLRQVPMYLIAQLIGSILASGTLYIMFEVDEKAYFGTLPSGSDGQSLVMEILVSFLLMFVISAVATDNRAIGELAGIAVGMTIAIDLFIAGPVSGASMNPARSIGPAIIMNNYDSIWVYIVGPFVGTIVGAFAYSLIRFTDKPLREISKAPSTLFNSVSTR 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g2161 266 MobiDBLite consensus disorder prediction 1 21 - -
Dere09g2161 266 SUPERFAMILY Aquaporin-like 31 251 IPR023271 -
Dere09g2161 266 ProSitePatterns MIP family signature. 90 98 IPR022357 -
Dere09g2161 266 CDD MIP 34 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere09g2161 266 Pfam Major intrinsic protein 28 239 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere09g2161 266 NCBIfam MIP family channel protein 38 239 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere09g2161 266 PRINTS Major intrinsic protein family signature 72 96 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere09g2161 266 PRINTS Major intrinsic protein family signature 109 128 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere09g2161 266 PRINTS Major intrinsic protein family signature 34 53 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere09g2161 266 PRINTS Major intrinsic protein family signature 154 172 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere09g2161 266 PRINTS Major intrinsic protein family signature 222 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere09g2161 266 PRINTS Major intrinsic protein family signature 185 207 IPR000425 GO:0015267|GO:0016020|GO:0055085
Dere09g2161 266 Gene3D Glycerol uptake facilitator protein. 2 253 IPR023271 -
Dere09g2161 266 PANTHER AQUAPORIN NIP2-1 11 252 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g2161 Dere-ChrDere09 30819280 30823429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g2161 4 259 Major Intrinsic Protein MIP AT5G37820 64.231 8.04e-121 346