Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g2147 ATGAAGACAGAAGAGGACGAGACAATGGCCGGCGGATTCGCTGGCGCCGGGGGCCGCATGCCGGAGCTACTAGGCCTGGTTCATGACATCGCCGGAATGTGTGGCGGTGCAGCTTCTGGTTCTTCCTCCGCCACCGCCATTGCCGCCGATGCTATGTTCAAGAAGGACTGCGTCGATCTGGTTCGTCGGATCTCACTTCTCTCTCATTTGTTCGAGGAAATTAGGGATTTGAAGGCTGTTGATTCGGCAGAGTTAAATGCTTCCACTTCTTTCAATGACTCTGCTAATTCCTGGTCCTCTGATCTGGTGCTTGCTCTCCACTCTGCTAAGCGCCTTCTTGCCGTCGCTAGGAATTTCCGTTCCAATTGCACTGCCGATGGAGCTGCGAAGACAATTGTTTTCCAATTTCAGTGTGTGACATGGAAATTGGAAAAACTATTGAGCAACTTACCATATGACCATTTGGACATATCAGAGGAAGTCAAAGAACAGGTGGAGTTGGTGAGAACACAGTTGAGTCGAGCCACGGAAAGATACGGATCTTTTATTTCAAATATGTCATCCAATGACTTTTCCCGGCCACTGGCTCAAAACATTAGTCAGGTTATTGGCAAATCTAAAAATGGGTTGCATAAACAAAACAGCTGTCCTGACTATTTATTAAAACTAGACAGCATTCCTAAAAGCAATGGATGGAAAAGTTGCAGCACATATCAGGCAAGTCCTTGCTTGGAAAGGGCGAGGAGCATCCCAGCCTCTTCTGAGGTTTCCATTTTAGATGTGATTCCTCCTGGAAGTCAAGAAAATTCTGAGAGGAAGAGCCTAAATGAAGTTAAAAAACCTGAAGCCATTGTACTTCCTCAAGATTTTCTTTGCCCTATATCCTTGGAACTAATGAGGGATCCTGTAATTGTGGCCACAGGTCAGACATATGAGCGGTCTTACATACAGAGATGGATAGATTGTGGAAATGCAACTTGTCCAAAAACTCAGCAGAAGTTACAAAATTTGACCTTAACACCAAATTATGTTCTAAGGAGCCTTATCACTCAGTGGTGTATAGATAACAACATTGAGCAGCCAACGGGACTAACCCATGGCAAGCTAAAAAACAGTGATGGATCATTTAGAGATGTTACGGGTGACATAGCAGCCATTGAAGCTTTGGTCTGGAAGCTCTCAAGCCAGTCCATTGAGGAGCGTAGAGCAGCTGTCACTGAAATCCGATCACTCTCAAAACGGAGCACAGACAACAGGATACTAATTGCTGAAGCCGGAGCAATTCCAGTGCTGGTCAACCTCTTAACATCAGAAGATGTATTGACGCAAGAGAATGCTGTTACTTCAATTCTTAACCTCTCTATATATGAAAACAACAAGGGACTTATAATGCTTGCAGGTGCTATCCCATCCATTGTTCAAGTTCTCAAAGCTGGAAGCATGGAAGCAAGAGAAAATGCTGCAGCTACCCTCTTTAGCTTATCACTTGCAGATGAGAACAAAATAATAATTGGCTCCTCAGGAGCTATTCCTGCTTTGGTAGAATTGCTCCAAAATGGTAGCCCTAGAGGGAAGAAGGACGCTGCAACAGCAATATTCAATTTATGCATTTATCAAGGGAACAAGGGTAGAGCCATTCGGGCAGGGATCATTACTGCATTGTTGAAGATGCTTGCAGATTCAAGCAAATCAATGGTTGATGAAGCCCTAACGATAATGTCAGTTCTTGCCAGCCACCAGGAGGCAAAAGTTGCAATTGTAAAGGCTAACACGATCCCGGTTTTAATTGATCTTTTGAGGACTGGTCTGCCGCGAAACAAAGAGAATGCAGCTGCCATTTTACTTTCCTTGTGTAAGAGAGATGCTGACAATCTTGCCTGCATAAGTAGACTTGGTGCTGTCTTACCTTTGACCGAACTTGCTCAGGGTGGCACTGAAAGAGCTAAACGGAAGGCTACTTCGTTATTGGAACATATTCGAAAGTTACAGCAGCTTTGA 1998 0.4454 MKTEEDETMAGGFAGAGGRMPELLGLVHDIAGMCGGAASGSSSATAIAADAMFKKDCVDLVRRISLLSHLFEEIRDLKAVDSAELNASTSFNDSANSWSSDLVLALHSAKRLLAVARNFRSNCTADGAAKTIVFQFQCVTWKLEKLLSNLPYDHLDISEEVKEQVELVRTQLSRATERYGSFISNMSSNDFSRPLAQNISQVIGKSKNGLHKQNSCPDYLLKLDSIPKSNGWKSCSTYQASPCLERARSIPASSEVSILDVIPPGSQENSERKSLNEVKKPEAIVLPQDFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNATCPKTQQKLQNLTLTPNYVLRSLITQWCIDNNIEQPTGLTHGKLKNSDGSFRDVTGDIAAIEALVWKLSSQSIEERRAAVTEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDVLTQENAVTSILNLSIYENNKGLIMLAGAIPSIVQVLKAGSMEARENAAATLFSLSLADENKIIIGSSGAIPALVELLQNGSPRGKKDAATAIFNLCIYQGNKGRAIRAGIITALLKMLADSSKSMVDEALTIMSVLASHQEAKVAIVKANTIPVLIDLLRTGLPRNKENAAAILLSLCKRDADNLACISRLGAVLPLTELAQGGTERAKRKATSLLEHIRKLQQL 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g2147 665 Pfam Armadillo/beta-catenin-like repeat 498 536 IPR000225 GO:0005515
Dere09g2147 665 Pfam Armadillo/beta-catenin-like repeat 416 454 IPR000225 GO:0005515
Dere09g2147 665 Gene3D - 566 664 IPR011989 -
Dere09g2147 665 Pfam U-box domain 287 356 IPR003613 GO:0004842|GO:0016567
Dere09g2147 665 Coils Coil 158 178 - -
Dere09g2147 665 FunFam RING-type E3 ubiquitin transferase 565 664 - -
Dere09g2147 665 FunFam RING-type E3 ubiquitin transferase 285 360 - -
Dere09g2147 665 PANTHER U BOX DOMAIN-CONTAINING 52 660 - -
Dere09g2147 665 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 426 468 IPR000225 GO:0005515
Dere09g2147 665 Gene3D - 366 459 IPR011989 -
Dere09g2147 665 Gene3D - 460 565 IPR011989 -
Dere09g2147 665 SUPERFAMILY RING/U-box 286 360 - -
Dere09g2147 665 SMART Ubox_2 289 352 IPR003613 GO:0004842|GO:0016567
Dere09g2147 665 CDD RING-Ubox_PUB 287 339 IPR045210 -
Dere09g2147 665 FunFam RING-type E3 ubiquitin transferase 364 564 - -
Dere09g2147 665 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 285 359 IPR013083 -
Dere09g2147 665 SMART arm_5 538 578 IPR000225 GO:0005515
Dere09g2147 665 SMART arm_5 415 455 IPR000225 GO:0005515
Dere09g2147 665 SMART arm_5 579 619 IPR000225 GO:0005515
Dere09g2147 665 SMART arm_5 497 537 IPR000225 GO:0005515
Dere09g2147 665 SMART arm_5 456 496 IPR000225 GO:0005515
Dere09g2147 665 SMART arm_5 621 661 IPR000225 GO:0005515
Dere09g2147 665 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 508 550 IPR000225 GO:0005515
Dere09g2147 665 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 467 509 IPR000225 GO:0005515
Dere09g2147 665 ProSiteProfiles U-box domain profile. 285 359 IPR003613 GO:0004842|GO:0016567
Dere09g2147 665 SUPERFAMILY ARM repeat 385 659 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g2147 Dere-ChrDere09 30542484 30545258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g2147 33 664 U-box Gene Family AT1G23030 62.191 0.0 738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g2147 09 30542484 30545258 Dere09g2147 09 30542484 30545258 ECH