Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g2146 ATGGACAAAACCACCAGTCCAAGTCAACCCTTCTTTCTTTGTTTCTCTTGGATCCTCAAACCAACCAGCCAATCAACCCTAATATATATTATTCACTCCTTATTCAGCTTCATCATCCCACCCTCTCCCAAGAAAAAGATCCCCACCACCACATTTCTGTCCTCTGCAAATCTCTCTCTCTCTCTTTCTCTCTCTCTCGCTGCCTCTTCGATCTTGCCTCTTCCAATCATCGTCTCCTTCCACTATTCTAGCAAGCCAAGCTTTGATTCATTTGCCCTTTTGAGGAAACCACAAGTTGAAGATACAAGAGAGAAGAAAAGAAAGGAATATTATAGAGTATTTGCGAACATGAGGAAGCCTTGCTGTGAAAGGCAAGACATGAACAAAGGAGCTTGGTCCAAACAAGAAGACCAGAAACTCATTGATTACGTCAAGAAACATGGCGAAGGTTGCTGGCGTACTCTTCCTCAAGCTGCAGGCTTGCTTCGCTGTGGCAAAAGTTGCAGGCTGAGATGGATAAACTATCTACGGCCAGACCTTAAAAGAGGCAACTTTGCTGAAGATGAAGAAGATCTCATCATCAAGCTTCATGCACTGCTAGGCAATCGTTGGTCACTGATAGCTGGAAGACTACCAGGGCGGACAGACAATGAAGTGAAAAACTATTGGAACTCTCATCTAAGAAGAAAGCTCATCAACATGGGAATTGATCCAAATAATCACAGATTGAGTCACAAATACCCTCCCCTTCAAAGCCCTACCATATCTGCTAGCTCAACATCATCTGGCTTGAAAGGCAGTAGTTCCAAGAACAATAATACTGAGCCAATGAAGCCCCAAAATGGTAGTGGTGAGATCAATCATGAACAGGTTTCAGATTCTGCAAGTGTTTTGGAAAATGAGTCCTATGGCTTGCCAGATTTGAACCTTGATCTCACAATGAGCGCTCCTTCACAATCACCCATACCCACTAGTGCTGCTCGTGAAGACACTAAAAAGCCAATTCATCATGAATCTAAGTCATCAAGGGAAATGCATTTTGCTTCTCCAACTCTACTTCTGTTCCAGTGA 1071 0.4332 MDKTTSPSQPFFLCFSWILKPTSQSTLIYIIHSLFSFIIPPSPKKKIPTTTFLSSANLSLSLSLSLAASSILPLPIIVSFHYSSKPSFDSFALLRKPQVEDTREKKRKEYYRVFANMRKPCCERQDMNKGAWSKQEDQKLIDYVKKHGEGCWRTLPQAAGLLRCGKSCRLRWINYLRPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHLRRKLINMGIDPNNHRLSHKYPPLQSPTISASSTSSGLKGSSSKNNNTEPMKPQNGSGEINHEQVSDSASVLENESYGLPDLNLDLTMSAPSQSPIPTSAAREDTKKPIHHESKSSREMHFASPTLLLFQ 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g2146 356 MobiDBLite consensus disorder prediction 238 350 - -
Dere09g2146 356 MobiDBLite consensus disorder prediction 329 344 - -
Dere09g2146 356 SMART sant 181 229 IPR001005 -
Dere09g2146 356 SMART sant 128 178 IPR001005 -
Dere09g2146 356 MobiDBLite consensus disorder prediction 312 326 - -
Dere09g2146 356 ProSiteProfiles Myb-like domain profile. 177 227 IPR001005 -
Dere09g2146 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 177 231 IPR017930 -
Dere09g2146 356 Gene3D - 184 248 - -
Dere09g2146 356 Gene3D - 129 181 - -
Dere09g2146 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 124 176 IPR017930 -
Dere09g2146 356 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 117 313 - -
Dere09g2146 356 Pfam Myb-like DNA-binding domain 129 176 IPR001005 -
Dere09g2146 356 Pfam Myb-like DNA-binding domain 182 227 IPR001005 -
Dere09g2146 356 CDD SANT 131 176 IPR001005 -
Dere09g2146 356 CDD SANT 184 227 IPR001005 -
Dere09g2146 356 MobiDBLite consensus disorder prediction 245 299 - -
Dere09g2146 356 FunFam MYB transcription factor 183 244 - -
Dere09g2146 356 FunFam MYB-related transcription factor 128 181 - -
Dere09g2146 356 SUPERFAMILY Homeodomain-like 126 223 IPR009057 -
Dere09g2146 356 ProSiteProfiles Myb-like domain profile. 124 176 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g2146 Dere-ChrDere09 30517919 30520440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g2146 118 334 MYB Transcription Factor Family AT4G09460 50.222 4.67e-78 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere09g2146 Myb_DNA-binding 5.3e-15 CL0123