Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g2115 ATGGCTTCACGTAGACTTGTATCTTCTTTAATTCGATCCTCCCTTCGTCAATCTCCATCCAAATCTTCCATTATCGGCTCAAGCCCCAAACTTTCTTCCTCATCAGTCTTGGGTCGTCGTCCTTCTCCATATGGCTACCTCCTCAATCGTGTCACCGAGTATGCTACCTCAGCCGCAGCCGCTGCTGCCCCACCGGCGCCAGCGAAGAAGGACGTCGGAAGCGGTGGTGGGAAGATCGTTGATGAATTCACTGGCAAAGGTGCGATTGGGCAGGTGTGTCAGGTCATTGGAGCTGTTGTTGATGTTAGATTCGAAGAGGGTTTGCCTCCAATCTTGACTGCGCTTGAGGTTATGGACAATTCTATTCGATTGGTGTTGGAGGTGGCTCAGCATTTGGGTGAGAATATGGTCAGAACTATTGCTATGGATGGGACTGAAGGGCTTGTTAGAGGACAACGCGTTCTCAACACTGGATCGCCGATTACTGTTCCTGTAGGTAGGGCTACCCTTGGACGCATCATAAATGTCATTGGAGAGCCTATTGATGAGAAGGGTGAAATCAAAACTGAGCATTTTTTGCCCATTCATAGAGAAGCTCCTGCTTTTGTTGAGCAAGCAACCGAACAACAGATCCTTGTTACAGGAATTAAGGTTGTTGACTTGCTTGCACCATACCAAAGAGGTGGGAAGATTGGATTGTTTGGTGGTGCTGGTGTAGGAAAAACTGTGCTTATTATGGAACTTATCAACAACGTTGCAAAGGCTCATGGTGGTTTCTCTGTGTTTGCTGGTGTTGGGGAACGAACCCGAGAAGGTAATGACTTGTACAGAGAAATGATTGAGAGTGGTGTCATTAAGCTTGGTGACAAGCAGAGTGACAGTAAATGTGCACTTGTGTATGGTCAAATGAATGAGCCCCCTGGTGCTCGTGCCCGTGTTGGTCTTACTGGGCTTACTGTTGCTGAGCACTTCCGTGATGCTGAAGGGCAAGATGTGCTACTTTTCATTGACAACATTTTCCGCTTTACGCAAGCCAACTCAGAGGTGTCTGCTTTGCTTGGTCGTATCCCATCTGCTGTCGGTTACCAACCAACATTGGCTACTGATCTTGGAGGTCTTCAAGAGCGTATTACAACCACCAAGAAGGGTTCAATTACCTCTGTACAAGCTATTTATGTGCCTGCTGATGACTTGACAGATCCAGCTCCTGCTACCACTTTTGCTCACTTGGATGCTACAACTGTGTTGTCGCGACAGATCTCTGAGCTGGGTATCTATCCTGCTGTTGATCCCCTGGATTCTACATCTCGTATGCTCTCACCCCATATTTTGGGTGAGGATCACTATAATACTGCTCGTGGTGTGCAAAAGGTTCTTCAGAATTACAAGAATCTTCAAGATATCATTGCCATTTTGGGAATGGATGAGCTTAGTGAAGATGATAAGTTGACTGTTGCCCGTGCTCGTAAAATCCAACGTTTCTTGAGCCAGCCTTTCCATGTTGCAGAAGTCTTCACTGGTGCCCCCGGTAAATATGTAGACTTGAAGGAGAGCATAAACAGTTTTCAGGGTGTGTTGGATGGCAAATACGATGACCTTCCTGAGCAATCATTTTACATGGTTGGCGGTATCGACGAGGTCATTGCAAAGGCAGACAAAATTGCTAAGGAAGCTGCATCTTAA 1683 0.467 MASRRLVSSLIRSSLRQSPSKSSIIGSSPKLSSSSVLGRRPSPYGYLLNRVTEYATSAAAAAAPPAPAKKDVGSGGGKIVDEFTGKGAIGQVCQVIGAVVDVRFEEGLPPILTALEVMDNSIRLVLEVAQHLGENMVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRATLGRIINVIGEPIDEKGEIKTEHFLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQSDSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEDHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVDLKESINSFQGVLDGKYDDLPEQSFYMVGGIDEVIAKADKIAKEAAS 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g2115 560 CDD ATP-synt_F1_beta_C 443 550 - -
Dere09g2115 560 SMART AAA_5 227 499 IPR003593 GO:0016887
Dere09g2115 560 FunFam ATP synthase subunit beta 161 438 - -
Dere09g2115 560 Hamap ATP synthase subunit beta [atpB]. 87 554 IPR005722 GO:0015986|GO:0045261|GO:0046933
Dere09g2115 560 PANTHER ATP SYNTHASE 71 557 - -
Dere09g2115 560 NCBIfam F0F1 ATP synthase subunit beta 89 553 IPR005722 GO:0015986|GO:0045261|GO:0046933
Dere09g2115 560 FunFam ATP synthase subunit beta 78 160 - -
Dere09g2115 560 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 439 555 - -
Dere09g2115 560 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 215 436 IPR000194 GO:0005524
Dere09g2115 560 Gene3D - 161 438 IPR027417 -
Dere09g2115 560 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 442 IPR027417 -
Dere09g2115 560 ProSitePatterns ATP synthase alpha and beta subunits signature. 427 436 IPR020003 GO:0005524
Dere09g2115 560 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 86 160 IPR036121 GO:0046034|GO:1902600
Dere09g2115 560 FunFam ATP synthase subunit beta 439 558 - -
Dere09g2115 560 CDD ATP-synt_F1_beta_N 88 161 - -
Dere09g2115 560 Gene3D - 79 160 - -
Dere09g2115 560 Pfam ATP synthase F1 beta subunit 1 50 IPR020971 GO:0000275|GO:0005524|GO:0006754|GO:0016887
Dere09g2115 560 PIRSF ATPase_subunit_beta 6 560 - -
Dere09g2115 560 Gene3D - 439 560 IPR024034 -
Dere09g2115 560 CDD F1-ATPase_beta_CD 162 441 - -
Dere09g2115 560 Pfam ATP synthase alpha/beta family, beta-barrel domain 92 158 IPR004100 GO:0046034|GO:1902600
Dere09g2115 560 Gene3D ATP synthase, F1 beta subunit 1 54 IPR042079 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g2115 Dere-ChrDere09 29870277 29873546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g2115 125 497 Primary Pumps ATPases(2) AT1G20260 29.177 2.03e-29 119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g2115 09 29870277 29873546 Dere09g2115 09 29870277 29873546 ECH