Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g2101 ATGGGATTACAGAACCAGCTAAACGACGTCGCTTCAGATTCGATTCCGCTACTTCTCTTGGCTCTCATCGCCGACTGCGTGAGCCACCTCCGCTCCTTGCTTATCAGCTTCCTCCAATCGCTCGGTCTCTCCAGATTCGACCCTAACCCCGTCGTTGTCGATGACGGATTCCTCAGCGCCGTCGGATCAGGCCTCGCCGGCCTCATCGTGCTCTCCGAGCAGCTCAACCTCAACCGCCGCGTCTCCTACCGATACTCCGTCCTCGACGGCGGCGATGGTTGTCCCGCCGGCGTGATTGGTGCTCCCAAGTGCGTTGTGTGCCAGAGCACGTTCAGGGAGGGGGACCAGGTCCGACGGCTTCCGTGCCGCCACGTATTCCATCGACGATGCTTCGACGATTGGCTAGACCACCTCAAGTTCAACTGCCCTCTCTGTCGGTCGCCGCTGGTCTCCGACCAGCGCGTGGCGCTGGCGGAGCGGCGCGTCGGTGCGGAGCTTGTTTCCTGGTTCTCTTTGCGGTGA 522 0.6169 MGLQNQLNDVASDSIPLLLLALIADCVSHLRSLLISFLQSLGLSRFDPNPVVVDDGFLSAVGSGLAGLIVLSEQLNLNRRVSYRYSVLDGGDGCPAGVIGAPKCVVCQSTFREGDQVRRLPCRHVFHRRCFDDWLDHLKFNCPLCRSPLVSDQRVALAERRVGAELVSWFSLR 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g2101 173 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Dere09g2101 173 SUPERFAMILY RING/U-box 103 152 - -
Dere09g2101 173 SMART ring_2 104 145 IPR001841 -
Dere09g2101 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 161 IPR013083 -
Dere09g2101 173 Pfam Ring finger domain 103 146 IPR001841 -
Dere09g2101 173 PANTHER RING ZINC FINGER PROTEIN-RELATED 84 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g2101 Dere-ChrDere09 29642732 29643253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g2101 1 173 C3H Transcription Factor Family AT1G15100 49.711 8.27e-48 151