Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g2096 ATGGATAATAAGGACGCTTGCTCTCCTTCTTCCAATGGCGAACTTGGCAACAACATCGCCACCACCGGCCAAATGCAGTCAAATGGCACCTACTCTACTTGGTTTTCCGACAAGCCGTCCCTCTCAGCCATCGACGATGACGGCCTCTCGCTTCACCAGTTTGGAGGAAACTCTCCCTTGAAGTACAGCGAGTCGGCGATTCAGAGTCATCTGTACGACTCCTGCGTCATACAGAACCACCAAGATATGGTGAACCGTCATAGTCTGTGCCTAAATCGCCTTGCCGAAATTTCGAAGGAGGTCGAGGCTCTGAGGCAGGAGAACACCCAACTTCGCGAGCTGAACAAGCAACTTAGCCTCCTCATTCAGGATTCAGTCCAGAAGCAATTGGATGGTTCCTCTGGCCATAAGGAAGCGTTTGATGTTGTAAATGGGTTTCGTGGCTTACGTATTGGGGACAATTTTGGGGATGGGAAAGAAAACTGCGCTGATTGGAACACGGATCTGGAGGTTTCGGACGAGAGCCCAACAAGCGTGATTGAGAACAGCGTTGAAGTGGAGAGGTGTTCGCTGCCCAAGAGCATATCTGTGAGGTCAAATGGGTACTTGAAGGTGGCTCAGAGTGTGGCTAGTGCCAGCAGTGGCTGTCGCACCAGGGGCTCTGCTAGGCCACGCACGTCCTCGTCGCCATCTGATATCGTTAGTAATTACTATTCAGATTTTGCTTTTATTACAATGATACAGCAAAAAGTATATGTGCGTGGAGGGACGGAGGAGGAAGAACCTCTTGAGATGGTGGTGTACAACCAAGGCATGTTCAAGACTGAGCTGTGCAACAAATGGCAGGAGACTGGCACATGCCCTTATAAAGATCAGTGCCAATTTGCTCACGGCATTGATGAGCTCCGCCCTATCATCCGCCATCCACGCTACAAAACTGAAATCTGCAGGATGGTCCTTGCTGGCGTTGTATGCCCATATGGCCACAGATGCCATTTCCGCCATGCACTCCGTGAACAAGATAAAGCCAATAACAGCCCAAGTCCAGGGCCTTGA 1056 0.5057 MDNKDACSPSSNGELGNNIATTGQMQSNGTYSTWFSDKPSLSAIDDDGLSLHQFGGNSPLKYSESAIQSHLYDSCVIQNHQDMVNRHSLCLNRLAEISKEVEALRQENTQLRELNKQLSLLIQDSVQKQLDGSSGHKEAFDVVNGFRGLRIGDNFGDGKENCADWNTDLEVSDESPTSVIENSVEVERCSLPKSISVRSNGYLKVAQSVASASSGCRTRGSARPRTSSSPSDIVSNYYSDFAFITMIQQKVYVRGGTEEEEPLEMVVYNQGMFKTELCNKWQETGTCPYKDQCQFAHGIDELRPIIRHPRYKTEICRMVLAGVVCPYGHRCHFRHALREQDKANNSPSPGP 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g2096 351 FunFam Zinc finger protein 36, C3H1 type-like 1 306 342 - -
Dere09g2096 351 SUPERFAMILY CCCH zinc finger 269 304 IPR036855 GO:0046872
Dere09g2096 351 ProSiteProfiles Zinc finger C3H1-type profile. 310 338 IPR000571 GO:0046872
Dere09g2096 351 PANTHER CCCH ZINC FINGER/TIS11-RELATED 80 344 IPR045877 GO:0003729
Dere09g2096 351 SMART c3hfinal6 310 337 IPR000571 GO:0046872
Dere09g2096 351 SMART c3hfinal6 272 299 IPR000571 GO:0046872
Dere09g2096 351 Gene3D - 306 344 - -
Dere09g2096 351 Gene3D - 267 304 - -
Dere09g2096 351 MobiDBLite consensus disorder prediction 1 23 - -
Dere09g2096 351 ProSiteProfiles Zinc finger C3H1-type profile. 272 300 IPR000571 GO:0046872
Dere09g2096 351 FunFam zinc finger CCCH domain-containing protein 15-like 266 305 - -
Dere09g2096 351 SUPERFAMILY CCCH zinc finger 306 340 IPR036855 GO:0046872
Dere09g2096 351 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 273 298 IPR000571 GO:0046872
Dere09g2096 351 Coils Coil 94 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g2096 Dere-ChrDere09 29559569 29561284 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g2096 71 342 C3H Transcription Factor Family AT1G68200 51.590 1.44e-78 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dere09g2096 zf-CCCH 4.7e-10 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g2096 09 29559569 29561284 Dere09g2096 09 29559569 29561284 ECH