Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g2094 ATGGAAGGTAGGACAGTGTCACTGTTCAATTCTGTTCCTAGCTTTGCACAAGGCAGTGACATTTTGCTGGTACACAATGACAAATTGTCTCTTGGGTACCTCTCATCACTGCTTCGGCAATGCTCATTCAAAGTTACTGCTACTAATCAAGCAACAGCAGCCATTGACATGGTTTGTCATCGAGAAGGCAAGTTCAAACTTGTCATGGCAAAAGCTAACATGCCTGACATGAGCACTCTTTCTTTCCTCAACAAACTGCTCCTGAAGGATATCATTGTCATCTTCATCTCATCTGGACAAAATGATGGGGCAGCAAGAGCAGCATTAGATGAAGGATTATGTTATCTCCTAGAGGAACCAATCCAACCAGAGGATCTCATATTTGTGTGGCAACAAGTGTATCACCCAAATAACAACTTAGCAATTCATAATGCAAAATCTAAAGAGAAGGTGCATGAATCAAGTGGAAATCAGGAAAGAACTCATCATGGTGTCAGAGGCAAGAAGAGAGGTAAGAGAGCCAAACTTGGCTCACATCAGATGAACTTAGACAACAATTATCATACTGTAAGAGAGGAGGGAGACGAAATGGGAGAACACAACAATGACCGATCCTCTGCAAAAAGGCCACGTATTTCTTGGACTCCTGATCTGCATTATAAGTTTGTACATGCCATAAGTGTTCTGGGGGAGAAGAATAGTCGTCCAAAGGAAATACTACAGATGATGGATGTTCCTAATCTGACATGTCGCCAGATTGCTAGCCATCTGCAGAAATTCAAGTATGAAGTAAGGCGTCTCCAGGATTTTTGTGTTATTGATTTACCTCCAGTGAGTAACTCATCAAACTTCAGTGGCAGAACCAAGTCACCCTCATCATTTGCAAGCCAGAGTTACACAAGTTACCCCACATTAGCTGATTTCCTGAGTGAGAACCAGAATCTAAACCAGTTTCCATGGAAGATTGCTGAAACAAAAGGACAGGAAAATTTTCAACAGCAGGAAACCCCAGGCTATGCAGACTGTTCATTTCAATATCCAACAGAGCTGGTCAATTATGGAAACCAAGATCTGGAAGCTGTAGTGAGAGGAGCACTGCCAAAGTATAATAATATCTCAAAATTTCTTGGAGAAGATAGTGACAAATATGACTGCTTTGAAAATGGATTGATTCGAGATGATACAACCCGAAACTTTGAGACATTAAAAAATTCTATCTTTGGAAATAGTTCCAGTTCACAGAAGTCTGATGACGGCAACCATAGCCATGCAAGTCCTGTTGAGGCCAGGACATCTTCTGTTGTGAGAGGACCAGAGCCAGAAGCTTTAACAAATCAAAGCCAAACCTTGACAGAACACAGTAATATATTAAAAATTCTTGGAGAAGATCGTGATGGAAATGATTGCTTTGGAAACGGACCAGATGATATTACCCAAAACTATGAAATACTAAAGAGTTCTTCCTTTGGAAATAGTTCTAGTTCACAACAGTCTGATAGCCCTGCAAATCTTTTGAAAGCTAGGTCATCTGCCATAGTTGAAGGACCTGAGTCAGATGCTCTAACGGATCAAAACCAAAACCTGACAGAATATAATGGTATATTGAAATCTCTTGGAGAAGGATATGATTGTTTTGGAAAGGTGCCATATGCCCAAAACTTTGAGATGCTAAGAAATTCAATCCTTGGAAACAATTTTGGTGTACAGCAGTCTGATAACTACAATCCTAGTTGTCTAAGATTTTTGAAGTCCAAGCCATATGCTTTGAAGGATGAAAACGAATACTTGACAGAACTTAGTAATATCCCAGGATTTACTGGAGAAGATATTGCCCAAAACTCTCAGACACCAAGAAATTCTATCTCTGATAACAGTGTAAGCTTTTTGAAAGCCAAGCCATGTGCGGTAGTGGGAGGAACTGTACCAGATGCTTTAACAGATCATGACAAAACCCAGGCAGAATATGATATCTCAAGTAGTGTTGAAGATGATTCTGACAAATATGGCTGTTTTGGAAATGAACTGAGTCCAAATGATATGGCAATATAG 2049 0.4007 MEGRTVSLFNSVPSFAQGSDILLVHNDKLSLGYLSSLLRQCSFKVTATNQATAAIDMVCHREGKFKLVMAKANMPDMSTLSFLNKLLLKDIIVIFISSGQNDGAARAALDEGLCYLLEEPIQPEDLIFVWQQVYHPNNNLAIHNAKSKEKVHESSGNQERTHHGVRGKKRGKRAKLGSHQMNLDNNYHTVREEGDEMGEHNNDRSSAKRPRISWTPDLHYKFVHAISVLGEKNSRPKEILQMMDVPNLTCRQIASHLQKFKYEVRRLQDFCVIDLPPVSNSSNFSGRTKSPSSFASQSYTSYPTLADFLSENQNLNQFPWKIAETKGQENFQQQETPGYADCSFQYPTELVNYGNQDLEAVVRGALPKYNNISKFLGEDSDKYDCFENGLIRDDTTRNFETLKNSIFGNSSSSQKSDDGNHSHASPVEARTSSVVRGPEPEALTNQSQTLTEHSNILKILGEDRDGNDCFGNGPDDITQNYEILKSSSFGNSSSSQQSDSPANLLKARSSAIVEGPESDALTDQNQNLTEYNGILKSLGEGYDCFGKVPYAQNFEMLRNSILGNNFGVQQSDNYNPSCLRFLKSKPYALKDENEYLTELSNIPGFTGEDIAQNSQTPRNSISDNSVSFLKAKPCAVVGGTVPDALTDHDKTQAEYDISSSVEDDSDKYGCFGNELSPNDMAI 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g2094 682 ProSiteProfiles Response regulatory domain profile. 20 134 IPR001789 GO:0000160
Dere09g2094 682 FunFam Two-component response regulator 205 268 - -
Dere09g2094 682 Pfam Response regulator receiver domain 21 127 IPR001789 GO:0000160
Dere09g2094 682 NCBIfam myb-like DNA-binding domain, SHAQKYF class 210 261 IPR006447 GO:0003677
Dere09g2094 682 SUPERFAMILY Homeodomain-like 207 265 IPR009057 -
Dere09g2094 682 MobiDBLite consensus disorder prediction 408 429 - -
Dere09g2094 682 Gene3D - 19 156 - -
Dere09g2094 682 Gene3D - 205 268 - -
Dere09g2094 682 MobiDBLite consensus disorder prediction 147 162 - -
Dere09g2094 682 SUPERFAMILY CheY-like 18 135 IPR011006 -
Dere09g2094 682 MobiDBLite consensus disorder prediction 147 179 - -
Dere09g2094 682 SMART REC_2 19 130 IPR001789 GO:0000160
Dere09g2094 682 MobiDBLite consensus disorder prediction 408 450 - -
Dere09g2094 682 PANTHER - 10 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g2094 Dere-ChrDere09 29524247 29528518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g2094 12 267 Response Regulator Gene Family AT1G68210 30.909 5.64e-32 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Dere09g2094 Response_reg 5.8e-08 CL0304