Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g2045 ATGGCGATGCCAGACGGAGCTGTGGCTATCATGTCTGGCACTGTGAACGCAGTTGATTCCTCGCCTTCCATGACTGGCCTGAAGAACTCGTCTCTGCAATCGCCGATTCTGTTATTCTCATTCTTCCATAAAGCTATCCGCTCTGAGCTCGATAGTCTCCACCGAGCCGCCTTGGATTTCGCCACAAACCATCAAGCTGTCCCTGACATCAAACCCTTGTTCGATCGCTGTCACTTTCTTCGTACCATCTATAAGCATCATTGCAATGCGGAGGATGAGGTCATCTTTCCTGCCTTAGATATACGTGTGAAGAATGTTGCACGCACGTATTTCTTGGAGCATGAGGGCGAGGGTCTTCTTTTTGATCAACTATTCAAGCTTCTAAATTCTAATTTGCTAAACGATGAGGGTTATCGAAGAGAATTAGCTTCTTGCACTGGAGCCCTTCGAACATCAATTACCCAACATATGTTTAAGGAAGAGGAGCAGGTCTTCCCCTTGGTTATTGAGAAGTTTTCATTTGAAGAGCAGGCATCACTGGTGTGGCAATTTCTTTGCAGCTTACCAGTTAAAATGATGGCAGAATTTCTTCCCTGGCTTGCTTCATATATATCATCTGATGAACATCAGGATATGCTTAGGTGCTTGTGCTCAATAATTCCTGAAGAGAAGCTTCTTCAACGAGTTGTTTTTGGATGGATGGAAGGGGTAAAGATTAAATGTAGAAGCTGCACAAATGATACCAAGGTTCACTGTCAGAATGATGGTACACATGACTTAGTTAATCATTCTGAAAAGTTGTATTGTGCTTGTGAGCCTTACAAAACTGGAAAAAGGAAATGGATGGAGCTAGGCTTTGACCATAGAAGTTCTGCTGTATCATGCCCTATAGATGAAATATTACATTGGCATAAGGCTATAAGACAAGAATTGATTGATTTCAATGAGGCAGCTAGGAAAATTCAACTTTCCAGAAACTTTTCTGATTTGTCTGCATTTAATGGGAGGTTGCAGTTTATCACTGAGGTCTGTATCTTTCATAGCATTGCTGAGGACAAAGTTATATTCCCTGCTATAGATGCAGAGCTTTCTTTTTTTCATGAGCATGTCAATGAAGAACTTCAGTTCGACAAGCTTAGGTGCCTGATGGAAGGAATCCAAAATGCTGGTGCTAACTCATCATCTACTGAAGATTACATGAAGTTGATGTCTCATTCTGAACAAATAATGGGCACCATACTGAAGCACTTTGACAATGAGGAAGCACAGGTTCTACCACTTGCACGAAAACTTTTTAGCCCCCAAAGACAACGTGAATTACTTTATGAAAGTTTGTGCTTAATGCCTTTGAAATTGATCGAGTCTGTAATACCATGGCTGGTAGGATTTCTTAGCGAAGAAGAAGCGAAGTCATTTCTTTGGAATATGTATATGGCAGCCCCACCAACAGATCATGCATTAATTACACTTTTTTCTGGTTGGGCATGCAAAAGAAATTCTACAAACAATGGTTTCTCTTCAAGTTTGACAGGTTTGTGTCCTGCCTCGAGACAGTTGGGGATAGAAATCACTACCCCATCATTTTGCATGTGTGTGCCTTCATTCAGTCTTGATAAAAAATCTTCATCCATTCAACAAGATGATGCATACGGAAGTCTTGGACCAATCAAACATGAAAAGTCAGAGCAAAGGGAAAAGAATGATATTTCTCCCCTCACTGGAACCAGAGAATCACTTAACTCATCTGGTAATCAGTCTTGCTGTGTCCCTGGATTAGGGGTAAATGCGACCCAACTAGGACTGAGTTCTTTAGGCCCTACAAAATCTCTGCGATCCTTATCTGATTGTTCTTCTGCACCTGCTCTCAACTCTAGTCTTTTTGTCTGGGAAACAGCTGTAGTATCTGCTGACAATGGGTTTATAACAAGGCCTATTGATACAATATTTAAATTTCATAAAGCCATTTGTAAAGACTTGGAGTATTTGGATGTTGAATCTGGAACACTGTATGATTGTGATGAAACTTTCCTGAGGAAGTTCAGTGGTAGGTTTCGCTTATTGTGGGGCTTGTACAGAGCTCATAGCAACGCAGAGGACGATATAGTATTTCCGGCATTAGAATCAAAAGAAACTCTTCACAATGTGAGCCACTCCTACACTTTAGATCACAAGCAGGAAGAGAAGTTATTTAAAGATATTTCATCCAGACTCTCTGAGCTTACTCAATTAGGCGAATCATTGCATAATAAGAATTCATCTGATCATTTAACCAGCTGCTGCTCTGATTATTCTGGTTGTTCTGATACCATACAAAAGTACAGTGAGCTAGTTACAAAGATTCAGAGCATGTGTAAATCTATCAGAGTGATCCTAGATCAACATATTTTCAGGGAGGAACTTGAATTATGGCCACTGTTTGATAGACATTTTTCTGTGGAAGAACAGGATAAAATTGTTGGTCATATAATTGGTACTACTGGGGCAGAGGTTCTTCAATCAATGCTTCCATGGGTAACTTCTGCTCTCACACAAGAGGAGCAAAACAAAATGATGGACACATGGAAACAGGCTACCAAAAACACAATGTTCAGTGAGTGGCTTAATGAATGGTGGGAAGGACCAGCTTCATTTTCAAATACGAGTACACCTAGTGACCGTGTTTCACTAGGTGCTGATGTCTACGAATGTTTGGATCATAGCTTTGAAGCTTTTAGGCCTGGGTGGAAAGATATATTCAGGATGAACCAGAATGAACTAGAATCAGAAATTAGAAAAGTTTCTCGAGATTCAACTCTTGATCCAAGAAGGAAATCGTATCTGATTCAAAATCTGATGACTAGTCGCTGGATAGCTTCTCAGCAGAAGTCATCTCAAGCAGCAGCAGGAGAATTTACAAATGGAGAAGATTTACTCAAAAGATCACCTTCCTTTCATGATCCCGGGAAAAAAGTCTTTGGTTGTGAGCATTATAGACGAAATTGTAAACTTCTTGCTGCTTGCTGTGGAATGCTATTTGCCTGCAGGTTCTGCCATGACAAAGTCAGTGACCATTCAATGGATAGGAAGGCTACCACTGAGATGATGTGCATGCGCTGCCTGCAACTACAGCCAATTGGACCAGTTTGTGCAACACCTTCTTGTGGTGGTCTGTCAATGGCAAAGTACTACTGTAGTATTTGCAAACTTTTTGATGATGAAAGGACAGTTTATCATTGCCCTTTCTGCAATATATGCCGTCTAGGGAATGGACTTGGTGTTGATTCCTTTCATTGCATGCAGTGTAATTGTTGCCTGTCAATGAAATTAATTGAACACCAGTGCCAGGAAAAAGGCTTAGAAACAGACTGCCCCATCTGCTGTGAGTTTTTGTTCACATCCAGTACATCTGTCAGAGCTCTTCCTTGTGGCCATTTCATGCATTCAACTTGCTTTCAGGCATATACATGTAGTCATTACACCTGTCCAATTTGTCGCAAATCTTTGGGAGATATGGCGGTTTATTTTGGCATGCTTGATGCTCTATTGGCTTCTGAGGAACTCCCAGAAGAATATCGGAATTGCCGTCAGGATATACTTTGCAATGACTGCGATAAGAAGGGGAATGCACCATTCCACTGGCTATACCATAAGTGTGGGTTTTGCAGGTCTTATAATACAAGGGTAATTTAA 3669 0.4096 MAMPDGAVAIMSGTVNAVDSSPSMTGLKNSSLQSPILLFSFFHKAIRSELDSLHRAALDFATNHQAVPDIKPLFDRCHFLRTIYKHHCNAEDEVIFPALDIRVKNVARTYFLEHEGEGLLFDQLFKLLNSNLLNDEGYRRELASCTGALRTSITQHMFKEEEQVFPLVIEKFSFEEQASLVWQFLCSLPVKMMAEFLPWLASYISSDEHQDMLRCLCSIIPEEKLLQRVVFGWMEGVKIKCRSCTNDTKVHCQNDGTHDLVNHSEKLYCACEPYKTGKRKWMELGFDHRSSAVSCPIDEILHWHKAIRQELIDFNEAARKIQLSRNFSDLSAFNGRLQFITEVCIFHSIAEDKVIFPAIDAELSFFHEHVNEELQFDKLRCLMEGIQNAGANSSSTEDYMKLMSHSEQIMGTILKHFDNEEAQVLPLARKLFSPQRQRELLYESLCLMPLKLIESVIPWLVGFLSEEEAKSFLWNMYMAAPPTDHALITLFSGWACKRNSTNNGFSSSLTGLCPASRQLGIEITTPSFCMCVPSFSLDKKSSSIQQDDAYGSLGPIKHEKSEQREKNDISPLTGTRESLNSSGNQSCCVPGLGVNATQLGLSSLGPTKSLRSLSDCSSAPALNSSLFVWETAVVSADNGFITRPIDTIFKFHKAICKDLEYLDVESGTLYDCDETFLRKFSGRFRLLWGLYRAHSNAEDDIVFPALESKETLHNVSHSYTLDHKQEEKLFKDISSRLSELTQLGESLHNKNSSDHLTSCCSDYSGCSDTIQKYSELVTKIQSMCKSIRVILDQHIFREELELWPLFDRHFSVEEQDKIVGHIIGTTGAEVLQSMLPWVTSALTQEEQNKMMDTWKQATKNTMFSEWLNEWWEGPASFSNTSTPSDRVSLGADVYECLDHSFEAFRPGWKDIFRMNQNELESEIRKVSRDSTLDPRRKSYLIQNLMTSRWIASQQKSSQAAAGEFTNGEDLLKRSPSFHDPGKKVFGCEHYRRNCKLLAACCGMLFACRFCHDKVSDHSMDRKATTEMMCMRCLQLQPIGPVCATPSCGGLSMAKYYCSICKLFDDERTVYHCPFCNICRLGNGLGVDSFHCMQCNCCLSMKLIEHQCQEKGLETDCPICCEFLFTSSTSVRALPCGHFMHSTCFQAYTCSHYTCPICRKSLGDMAVYFGMLDALLASEELPEEYRNCRQDILCNDCDKKGNAPFHWLYHKCGFCRSYNTRVI 1222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g2045 1222 Pfam Ring finger domain 1115 1158 IPR001841 -
Dere09g2045 1222 CDD Hr-like 38 166 - -
Dere09g2045 1222 MobiDBLite consensus disorder prediction 553 582 - -
Dere09g2045 1222 CDD Hr-like 646 804 - -
Dere09g2045 1222 Pfam Zinc-ribbon 1163 1220 IPR039512 -
Dere09g2045 1222 SUPERFAMILY Zinc hairpin stack 1053 1108 IPR037275 -
Dere09g2045 1222 SUPERFAMILY RING/U-box 1115 1162 - -
Dere09g2045 1222 ProSiteProfiles Zinc finger CTCHY-type profile. 1052 1115 IPR017921 -
Dere09g2045 1222 SMART ring_2 1116 1157 IPR001841 -
Dere09g2045 1222 Pfam Hemerythrin HHE cation binding domain 43 168 IPR012312 -
Dere09g2045 1222 Pfam Hemerythrin HHE cation binding domain 296 428 IPR012312 -
Dere09g2045 1222 Pfam Hemerythrin HHE cation binding domain 644 805 IPR012312 -
Dere09g2045 1222 ProSiteProfiles Zinc finger CHY-type profile. 980 1049 IPR008913 GO:0008270
Dere09g2045 1222 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 687 1222 - -
Dere09g2045 1222 Gene3D - 1186 1222 - -
Dere09g2045 1222 Pfam CHY zinc finger 987 1062 IPR008913 GO:0008270
Dere09g2045 1222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1111 1160 IPR013083 -
Dere09g2045 1222 MobiDBLite consensus disorder prediction 553 571 - -
Dere09g2045 1222 FunFam Zinc finger protein BRUTUS 639 869 - -
Dere09g2045 1222 FunFam Zinc finger protein-related isoform 1 1111 1160 - -
Dere09g2045 1222 ProSiteProfiles Zinc finger RING-type profile. 1116 1158 IPR001841 -
Dere09g2045 1222 Gene3D nmb1532 protein domain like 297 443 - -
Dere09g2045 1222 Gene3D nmb1532 protein domain like 33 186 - -
Dere09g2045 1222 CDD RING-H2_Pirh2-like 1115 1158 - -
Dere09g2045 1222 CDD Hr-like 298 426 - -
Dere09g2045 1222 SUPERFAMILY CHY zinc finger-like 980 1043 IPR037274 GO:0008270
Dere09g2045 1222 Gene3D nmb1532 protein domain like 642 869 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g2045 Dere-ChrDere09 27492803 27500913 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g2045 34 1222 C2H2 Transcription Factor Family AT3G18290 62.855 0.0 1487