Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g2039 ATGTTTAGAGGGAAATCAGTATACACAGAAAAGTCCAGGTTCTGGTCTCTGAAGAGGAAAGGGATAACATTAGTGGGACCCAATTCAAAAGGCTCTTCAAGCACACAAGAGCTCTTTGCATCAACACCAGCTATGTCTGCAGATGCAAAGAGAGAGTTTGAGTCTAATGAGGAAGAAACTGAGCTCAGAAGAGGCCCTTGGACTCTTGAAGAAGACAGTTTGCTCATACACTATATTGCTCGTCATGGTGAAGGTCGTTGGAATATGTTAGCCAAAAGTGCTGGATTGAAGAGGACTGGAAAGAGCTGCAGATTGAGGTGGCTGAACTACTTAAAACCAGATATCAAGAGAGGGAACCTTACTCCACAAGAGCAGCTTTCGATCCTTGAACTCCATTCTAAGTGGGGTAACAGGTGGTCGAAAATTGCTCAGCATCTGCCAGGCAGAACAGACAACGAGATCAAGAACTACTGGAGAACAAGGGTTCAGAAACAGGCACGCCAGCTCAACATTGAGTCTAACAGTGAGAGATTCATCGATGCCGTACGATGTTTTTGGATGCCGAGGTTGCTACAAAAGATGGAACAAAACTCTTCCTCTTCCTCTGTCTCTGTCACAAACATCAACTCTGAGAATTCTGCAATGAATGTCCCTTCTTTATCTCCTGCACAAGGGGGATTATCAGATATTGCAGCAAATCACACAAGTACCTGCAATAATGATAATAATAACAGTTGCCCAGATCATTATTCCTTGCAATTTCAAGAACCACTGGAAATAACAGAAAACTCAAGTACTACTACTTCTACTCTTCCTTATGCGTTTGAGAACTACAATAATAATGTTTTCTTCAATCAAGTCCAAGATAGCTATGGCATGGAGGGTCTAAACTTGGAGCCATTCTCAATTATTGAGAACTATGGCGTTTCTCAGCTTGATTATTCTCAGAGTGTAGAGAGTGATTGGGTGTTAAGCAGCATGGGAGAATGTTCATTGTGGAACTTGGATGAAATGTGA 1017 0.4218 MFRGKSVYTEKSRFWSLKRKGITLVGPNSKGSSSTQELFASTPAMSADAKREFESNEEETELRRGPWTLEEDSLLIHYIARHGEGRWNMLAKSAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQLSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARQLNIESNSERFIDAVRCFWMPRLLQKMEQNSSSSSVSVTNINSENSAMNVPSLSPAQGGLSDIAANHTSTCNNDNNNSCPDHYSLQFQEPLEITENSSTTTSTLPYAFENYNNNVFFNQVQDSYGMEGLNLEPFSIIENYGVSQLDYSQSVESDWVLSSMGECSLWNLDEM 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g2039 338 Gene3D - 120 165 - -
Dere09g2039 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 112 166 IPR017930 -
Dere09g2039 338 SMART sant 63 113 IPR001005 -
Dere09g2039 338 SMART sant 116 164 IPR001005 -
Dere09g2039 338 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 58 251 IPR044676 GO:0003700|GO:0006355|GO:0043565
Dere09g2039 338 ProSiteProfiles Myb-like domain profile. 59 111 IPR001005 -
Dere09g2039 338 SUPERFAMILY Homeodomain-like 62 158 IPR009057 -
Dere09g2039 338 CDD SANT 121 160 IPR001005 -
Dere09g2039 338 FunFam Myb transcription factor 64 116 - -
Dere09g2039 338 ProSiteProfiles Myb-like domain profile. 112 162 IPR001005 -
Dere09g2039 338 CDD SANT 66 111 IPR001005 -
Dere09g2039 338 Pfam Myb-like DNA-binding domain 117 160 IPR001005 -
Dere09g2039 338 Pfam Myb-like DNA-binding domain 64 111 IPR001005 -
Dere09g2039 338 FunFam MYB transcription factor 121 184 - -
Dere09g2039 338 Gene3D - 61 117 - -
Dere09g2039 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 111 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g2039 Dere-ChrDere09 27326511 27328012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g2039 59 238 MYB Transcription Factor Family AT1G68320 69.474 2.91e-88 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere09g2039 Myb_DNA-binding 3.7e-15 CL0123