Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g2028 ATGAGATTTTATGACAGTTGCAAGTTGTGCGTTGATCCAGTCTTGACAGTGTTTCTCAGCTTGCCTATGGCTCTTGAATCTTTAGAGGCAGCCAGAGGAGGAAGAGTATTATATATATCAAGATGTGTTGAAGACTATGATGCAAACGTATTTATGGGTGCTGATGTAACACATCCTCATCCGTTCGATGATTTCAATCCATCTGTTGCTGCTGTTGTTGGCAGCATGAATTGGCCAGCGGCAAATAAATATATTTCAAGAATAAGGTCTCAAACACATAGAAAAGAGATCATCCAGGATCTTGTTGCAATGTCACTGGGTGTGAAAGGAACCAGCAGGCCAACTCATTACCATGTGTTGTGGGATGAAAACCAGTTCACTTCTGATGACCTACAGAAGCTGGTTTACAATTTATGTTATACTTTTGTGAGGTGCACCAAGCCAATTTCTTTGGTTCCACCTGCTTACTATGCATATTTAGCAGTATACAGAGGCAGACTCTACCTCGAGCGATCAGAGTCCTTAGGTTTAAACAGAAGTACATCTACAATATCTAGAACTGCCCCTCCAAAGACAGCACCTCTACCAAACATCAAGAAGCTCATGTTCTACTGCTAG 618 0.4159 MRFYDSCKLCVDPVLTVFLSLPMALESLEAARGGRVLYISRCVEDYDANVFMGADVTHPHPFDDFNPSVAAVVGSMNWPAANKYISRIRSQTHRKEIIQDLVAMSLGVKGTSRPTHYHVLWDENQFTSDDLQKLVYNLCYTFVRCTKPISLVPPAYYAYLAVYRGRLYLERSESLGLNRSTSTISRTAPPKTAPLPNIKKLMFYC 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g2028 205 Gene3D - 107 205 IPR036397 GO:0003676
Dere09g2028 205 Gene3D - 47 106 IPR036397 GO:0003676
Dere09g2028 205 ProSiteProfiles Piwi domain profile. 110 170 IPR003165 GO:0003676
Dere09g2028 205 SUPERFAMILY Ribonuclease H-like 107 170 IPR012337 -
Dere09g2028 205 Pfam Piwi domain 44 101 IPR003165 GO:0003676
Dere09g2028 205 Pfam Piwi domain 105 167 IPR003165 GO:0003676
Dere09g2028 205 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 47 102 - -
Dere09g2028 205 SMART Piwi_a_2 7 170 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g2028 Dere-ChrDere09 27096975 27099999 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g2028 107 205 Eukaryotic Initiation Factors Gene Family AT5G43810 50.459 4.73e-31 117