Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g2025 ATGTGTATGTTCCCCTATGCTTGTCTTAGTATCTTTCTGTGTTGTAGCCCTAGGGCAAAGGACCTAGAGCCTGATGAAGTGGTAGAGGAGGAATAGAGACCAGAAGAAAATCCATTAGATCTCAACAATTTGCCCGATGACTACTCTAGAGATGGCAAACAAATCCTCGAAGATACCTCCTCATCTGTGTGCAGGAAAAAGAAAAACGGCGGGAAGGAAGGAAAGGAAGAGTGTGGGAAGGTCTATAAGTGTAGGTTTTGCTCCCTCAAGTTCTGCAAATCTCAGGCTCTTGGGGGTCACATGAACCGCCACCGCCAAGAAAGGGAAACCGAGACGCTGAACCATGCTCGTCAGCTCGTCTTCCGTAACGATCACACCATAGCCGCCCAAGGGGCCCCTCACTTAGGGTGCTGCCAACCAGTAGTAGCAGGAAGCTATCATCCAACAGGAGGCAACAACGTAGGAGACCCAACATTGCCTCTGAGATTTCCGAGGTACTTGTCGGGTTCATCGTCCACCCACATATCTCCACCGCCACCACCACCGCCTCCACAACCTTACAATATGTACGCATCTCCTTCACGACCAGTGTCATACCCTCCACACTATAACTCGTCTCATCAACAGCAAGTGAACGAGTACTACGTGGGTCATGTACTGCACCCCAACTACGTGGGCAGTGGTGGTGGTGGCGAGTCTAGCTACACCTGCATTGGTGCACCGGTGGGTCAAGGGTTCGGTGGCAAGGACGGGTCACTGCAGAACCAGGAGGAGGGTATGAATTGGGGAAGGAGCTATTCAGCGATCAATCGGTTTCAAGATGGGTTCTAA 831 0.5126 MCMFPYACLSIFLCCSPRAKDLEPDEVVEEEXRPEENPLDLNNLPDDYSRDGKQILEDTSSSVCRKKKNGGKEGKEECGKVYKCRFCSLKFCKSQALGGHMNRHRQERETETLNHARQLVFRNDHTIAAQGAPHLGCCQPVVAGSYHPTGGNNVGDPTLPLRFPRYLSGSSSTHISPPPPPPPPQPYNMYASPSRPVSYPPHYNSSHQQQVNEYYVGHVLHPNYVGSGGGGESSYTCIGAPVGQGFGGKDGSLQNQEEGMNWGRSYSAINRFQDGF 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g2025 276 SUPERFAMILY beta-beta-alpha zinc fingers 80 110 IPR036236 -
Dere09g2025 276 ProSitePatterns Zinc finger C2H2 type domain signature. 84 104 IPR013087 -
Dere09g2025 276 ProSiteProfiles Zinc finger C2H2 type domain profile. 82 109 IPR013087 -
Dere09g2025 276 Gene3D Classic Zinc Finger 58 132 - -
Dere09g2025 276 MobiDBLite consensus disorder prediction 174 190 - -
Dere09g2025 276 FunFam Zinc finger protein STAMENLESS 1 57 130 - -
Dere09g2025 276 PANTHER ZINC FINGER PROTEIN JAGGED 57 253 IPR045320 GO:0003700
Dere09g2025 276 MobiDBLite consensus disorder prediction 149 205 - -
Dere09g2025 276 MobiDBLite consensus disorder prediction 29 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g2025 Dere-ChrDere09 27038429 27041037 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g2025 35 245 C2H2 Transcription Factor Family AT1G13400 41.818 2.42e-32 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere09g2025 None None None