Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g2006 ATGCCCGAGCCTCGGAATCAACCGTCAACTCAGATTAACAATCTCTGCAAAAGGATGAAGCATAAGCCGAATCCCATTCAAGAGCTCAAAGTCCGGACGAGAAAGCTTCGCATAATCTGCGACGACCCTGACGCTACTGATTCATCTTCAAGCGAAGACGAAGGTGACCAACGAATTGAAAAAAGACCGGGAAAGATGAAGCGAATCGTTCGTGAGCTCACTCTTCCTCTTCTTTCACCCATGTCTAAATCCACTGAAACTGAAAGCTCGTTCCAGGAAAGCAACAATGGAGCGAAGACTTCTAAAGTCGTAGATGGTCAAACTCAAAACAAGAGGAGGGTTTTGACCAAAACCCCGTCAACGAGAAGCACGTCTTCTTCGAAGTTCAGAGGCGTTCGACAAAGGAAATGGGGAAAATGGGCTGCTGAAATTCGTGATCCATTCAAGGGTGTTCGTATCTGGCTAGGCACTTACAACACTGCCCAGGAAGCTTCTCAAGCCTATGAAGCTAAAAGGATGGAGTTTGAAACTATGGCTAAGGCTCAATCTGTGAAGAGCCACATTGTCTCTTCTTCTTCAGCTCAAGCAGCTGCTTCTGTATCAGAGGATTCAGAGAGTGTCCTCTCGCAAACATCACCTTCCTTTGTGCTCGAACGCGACACTTCAACTTCCAAATCCACCGAAAATGCTAACAATGTTAGTGACAGTTCAAGCAAAGAAGAACAACATCAACAAGAAGAAGCTGAAGCAGTAGCAGCTCTGGAAACCAATGATTTCCAGAACGAATTTGCAGAGCTTCAAATCCCCGATTTGAGCTTCCTGAACGAGCCACCACCATTGCCACCCACATCATCATCTGCAGCAGCACGAAATGGTTCAGACACAAACCTCGGACTGGATCTGGATTGGGTAATGTTCGATAATTTTGGTCAGGGATTCGATGAACCTTTCGGATTAGAGGACATTCAAATCTGTGGGTTTGATGATGATGACAACAATCCTGGTGAGCTTCCTGATTTCGATTTTGATCTCTGTGCTGACGAGTTTGCTGGTTGGACTGAGGAGCCCCTCAACATACCTTGCAGTTCTGTTTTGTTCTGCAAGAATATGTATGTTCTTGGGAGTGGTTTTGTGCTTGAAGAGTTACAAACTTGTATCGTTGAGGCATTGAAAGAAACTTCCGTATGTTCCAAATTCCTTCTCAGTGGAATCAAATGGCTATGGGATCTCATTGTTGGGGTGCAAGAAGATTCAAATCCCTTGATCTGTGATTCTGGATTGAGAGAGAGCAGAGAAATTGGCTTCAGAGGAGTGGGCCAAAGTAAGAATTTTCTTTTGCCAAGCAAAGCATATCGTCAACAAGAGGCAGCAAAAGCTGTTCTATCCCAAGTGTCATGTTTGGTTGACACCAATTGA 1416 0.4492 MPEPRNQPSTQINNLCKRMKHKPNPIQELKVRTRKLRIICDDPDATDSSSSEDEGDQRIEKRPGKMKRIVRELTLPLLSPMSKSTETESSFQESNNGAKTSKVVDGQTQNKRRVLTKTPSTRSTSSSKFRGVRQRKWGKWAAEIRDPFKGVRIWLGTYNTAQEASQAYEAKRMEFETMAKAQSVKSHIVSSSSAQAAASVSEDSESVLSQTSPSFVLERDTSTSKSTENANNVSDSSSKEEQHQQEEAEAVAALETNDFQNEFAELQIPDLSFLNEPPPLPPTSSSAAARNGSDTNLGLDLDWVMFDNFGQGFDEPFGLEDIQICGFDDDDNNPGELPDFDFDLCADEFAGWTEEPLNIPCSSVLFCKNMYVLGSGFVLEELQTCIVEALKETSVCSKFLLSGIKWLWDLIVGVQEDSNPLICDSGLRESREIGFRGVGQSKNFLLPSKAYRQQEAAKAVLSQVSCLVDTN 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g2006 471 SUPERFAMILY DNA-binding domain 127 175 IPR016177 GO:0003677
Dere09g2006 471 MobiDBLite consensus disorder prediction 21 42 - -
Dere09g2006 471 Gene3D AP2/ERF domain 127 182 IPR036955 GO:0003700|GO:0006355
Dere09g2006 471 MobiDBLite consensus disorder prediction 1 17 - -
Dere09g2006 471 MobiDBLite consensus disorder prediction 272 292 - -
Dere09g2006 471 MobiDBLite consensus disorder prediction 199 238 - -
Dere09g2006 471 MobiDBLite consensus disorder prediction 1 130 - -
Dere09g2006 471 PRINTS Ethylene responsive element binding protein signature 129 140 IPR001471 GO:0003700|GO:0006355
Dere09g2006 471 PRINTS Ethylene responsive element binding protein signature 151 167 IPR001471 GO:0003700|GO:0006355
Dere09g2006 471 CDD AP2 129 170 IPR001471 GO:0003700|GO:0006355
Dere09g2006 471 ProSiteProfiles AP2/ERF domain profile. 128 185 IPR001471 GO:0003700|GO:0006355
Dere09g2006 471 SMART rav1_2 128 182 IPR001471 GO:0003700|GO:0006355
Dere09g2006 471 MobiDBLite consensus disorder prediction 199 249 - -
Dere09g2006 471 MobiDBLite consensus disorder prediction 51 69 - -
Dere09g2006 471 Pfam AP2 domain 127 177 IPR001471 GO:0003700|GO:0006355
Dere09g2006 471 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 32 267 - -
Dere09g2006 471 MobiDBLite consensus disorder prediction 78 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g2006 Dere-ChrDere09 26672935 26675298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g2006 9 361 AP2-EREBP Transcription Factor Family AT1G68550 34.973 2.97e-42 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere09g2006 AP2 5.7e-11 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g2006 09 26672935 26675298 Dere09g2006 09 26672935 26675298 ECH