Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1998 ATGAAGATTTTTGTGAAGACTCTGAAAGGCACTCACTTTGAAATTGAAGTGAAGCCGGAAGATACGGTTACTGAGGTGAAGAAAAATATAGAAACTGTCCAGGGAGCGGATGTCTATCCTGCTGAAAAGCAGATGCTTATTCATCAAGGGAAGGTTCTCAAAGACGGCACCACCTTGGAGGAAAATAAAGTAGCTGAAAATAGTTTTGTTGTGATTATGCTTTCTAAGAGTAAGAGCTCATCTGGTGAGAGTTCTACTACTTCAGCTGCACCTTCAGCCAAGACCCCACCAACACCTGCCGCTCCTACTTCAACCTCTGTGTCAACCACACCTCAAGCTCCTGCTGTGGCTGCTGCTGCTGCACCGCCTGCTTCTTCTCCCGCACCTAATCCTGCTCCTGCTCCTGCTCCTGCTCCAATCGCTTCGGGCACTGCTGGGACAGAGTCTGATATCTATGGGCAGGCAGCATCTAATCTTGTGGCTGGAAGCAACTTGGAGGAAACAGTTCAACAAATCCTTGATATGGGCGGAGGGAGTTGGGATAGGGATACTGTAGTTCGTGCTCTACGTGCTGCTTACAACAATCCTGAGAGAGCTGTTGAATATTTGTATTCAGGTATCCCGGAGCAAGCTGAAGCTCCACCTGTGGCCCGAGTGCCTGCAAGTGCACAAACTGCAAATCCACCAGCGCCAGCTCCACAAGCACCACAATCGGCCCCTGCTGCTACTAGTGGACCTAACGCAAATCCTCTAGACCTCTTTCCCCAGGGCCTTCCCAATGTTGGTTCTGGTGCTGCTGGTGCAGGCACTCTAGATTTTCTGCGCAATAGTCAACAGTTCCAAGCCTTGCGAGCTATGGTGCAGGCAAATCCACAAATACTGCAGCCCATGCTTCAAGAGCTTGGAAAACAAAATCCGCATCTTATGAGATTGATACAGGAGCACCAGACTGACTTCCTTCGCCTGATAAATGAACCAGTGGAAGGTGGTGAGGGGAACATACTAGGGCAGCTGGCTGCTGCCATGCCGCAGCAAATAGCTGTCACCCCTGAGGAGCGACAAGCAATTGAGCGACTTGAAGCAATGGGTTTTGATCGTGCACTCGTATTGGAGGTATACTTCGCGTGCAACAAAAATGAGGAATTGGCTGCCAACTATCTCTTAGATCACATGCATGAGTTTGAGGAATGA 1191 0.4945 MKIFVKTLKGTHFEIEVKPEDTVTEVKKNIETVQGADVYPAEKQMLIHQGKVLKDGTTLEENKVAENSFVVIMLSKSKSSSGESSTTSAAPSAKTPPTPAAPTSTSVSTTPQAPAVAAAAAPPASSPAPNPAPAPAPAPIASGTAGTESDIYGQAASNLVAGSNLEETVQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEAPPVARVPASAQTANPPAPAPQAPQSAPAATSGPNANPLDLFPQGLPNVGSGAAGAGTLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNILGQLAAAMPQQIAVTPEERQAIERLEAMGFDRALVLEVYFACNKNEELAANYLLDHMHEFEE 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1998 396 MobiDBLite consensus disorder prediction 77 113 - -
Dere09g1998 396 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Dere09g1998 396 PRINTS DNA repair protein Rad23 signature 297 319 IPR004806 GO:0006289
Dere09g1998 396 PRINTS DNA repair protein Rad23 signature 346 362 IPR004806 GO:0006289
Dere09g1998 396 PRINTS DNA repair protein Rad23 signature 363 377 IPR004806 GO:0006289
Dere09g1998 396 PRINTS DNA repair protein Rad23 signature 378 393 IPR004806 GO:0006289
Dere09g1998 396 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 349 390 IPR015940 -
Dere09g1998 396 NCBIfam UV excision repair protein Rad23 1 395 IPR004806 GO:0006289
Dere09g1998 396 SUPERFAMILY Ubiquitin-like 1 83 IPR029071 -
Dere09g1998 396 Gene3D - 158 208 - -
Dere09g1998 396 MobiDBLite consensus disorder prediction 219 252 - -
Dere09g1998 396 CDD Ubl_Rad23 1 74 - -
Dere09g1998 396 SUPERFAMILY UBA-like 162 214 IPR009060 GO:0005515
Dere09g1998 396 FunFam UV excision repair protein RAD23 B 262 327 - -
Dere09g1998 396 Gene3D - 262 327 IPR036353 GO:0003684|GO:0006289|GO:0043161
Dere09g1998 396 Gene3D - 1 80 - -
Dere09g1998 396 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Dere09g1998 396 FunFam UV excision repair protein RAD23 homolog 343 391 - -
Dere09g1998 396 FunFam UV excision repair protein RAD23 homolog 158 208 - -
Dere09g1998 396 CDD UBA1_Rad23_plant 159 208 - -
Dere09g1998 396 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 385 - -
Dere09g1998 396 MobiDBLite consensus disorder prediction 77 145 - -
Dere09g1998 396 Pfam UBA/TS-N domain 165 203 IPR015940 -
Dere09g1998 396 Pfam UBA/TS-N domain 352 387 IPR015940 -
Dere09g1998 396 SMART uba_6 165 205 IPR015940 -
Dere09g1998 396 SMART uba_6 352 389 IPR015940 -
Dere09g1998 396 FunFam UV excision repair protein RAD23 1 80 - -
Dere09g1998 396 SUPERFAMILY XPC-binding domain 267 333 IPR036353 GO:0003684|GO:0006289|GO:0043161
Dere09g1998 396 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 163 206 IPR015940 -
Dere09g1998 396 MobiDBLite consensus disorder prediction 124 138 - -
Dere09g1998 396 Gene3D - 343 391 - -
Dere09g1998 396 SMART CBM 269 312 IPR006636 -
Dere09g1998 396 SMART ubq_7 1 75 IPR000626 GO:0005515
Dere09g1998 396 SUPERFAMILY UBA-like 333 394 IPR009060 GO:0005515
Dere09g1998 396 Pfam XPC-binding domain 271 326 IPR015360 GO:0003684|GO:0006289|GO:0043161
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1998 Dere-ChrDere09 26578227 26583623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1998 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 39.189 3.92e-09 52.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g1998 09 26578227 26583623 Dere09g1998 09 26578227 26583623 ECH