Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1965 ATGCAACGTCTGAAAATTGGGGTGCGCGAGTACATCGAACAGTTAGAACAAGAACGTCAAAAAATTCAGGTGTTCTCCAAGGAGCTTCCGCTTTCATTGGACCTTGTCACGCAAGCCATTGAAGCATACAGGCAACAACTATCTGGAACGACGACCGAGTACAACTTTCATGGGCAATCGGAGTGTTCGGAGCAGACGTCCATGGAAGAAGGCCCTGTTCTGGAGGAGTTTATTCCCATTAAGAAAAGAGCTTCCCATGATTGTGACGACGAAGACGACGAAGATGAACAACATTCACATAAGCCCAAGATTCTCAAGGACAACAATAAGAACTCAGATACGAGAAAATCGGACTGGCTCAGATCCGTGCAGCTTTGGAATCCAGATCCCCCAGCCAAAGAGGATGTGCCTAGAAAAACGTCGGTGGTGGAAGTGAAGAGAAATGGTGGAGCCTTCCAGCCATTCCACAGAGAAGACAATGTTGGAAAGCCTAATAATAATAACTCATCGGCGGGAAAATCGCTATCTCCGGCTCCGGTACCAGCGACTAGCTCCACTGCTGGAGCAGTCTCCGGAGGCATTGCCGGAAGCAACAAAAAATCAGATGAGAAAGAAGGACAGAGTCAGAGGAAGCAACGGCGGAACTGGTCGCCGGAGCTGCATAAGCGCTTCTTGCAAGCCCTTCAACAACTAGGCGGTCCAGATTCTGCAACGCCCAAGCAGATCAGAGAGCTTATGAAAGTTGATGGTCTCACAAATGACGAAGTCAAAAGCCACTTACAGAAATTTCGTTTGCACACAAGAAGACCGAGCCCCATGATTCCCAACAATGCTAATCCACAAACAGCTCCGTTTGTACTTGTGGGAAACATTTTTGTTCAGCCGCCAGAATATGCAGCAGCAGTAGCAACTTCAACAGCGTCAGGGGAGGTGACTACGGTTCCTGGGCCGGGGGGGATTTACGCGCCGGTGGCGGCACATCCACCGGCAATCCCACATATGCCGGCTCCGATGGTTAAGAAGCCACAGTTGAAGCAATTAGAGGAGGCTGAGCATTCACATTCAGAAGAAAGGGTGAACCACAGTGAAGGAGCTGTTCATTCAAATTCCCCTGATTCATCATCCTCCACACACACCACCTCCAATTCTCCTGGCTACTGA 1161 0.4944 MQRLKIGVREYIEQLEQERQKIQVFSKELPLSLDLVTQAIEAYRQQLSGTTTEYNFHGQSECSEQTSMEEGPVLEEFIPIKKRASHDCDDEDDEDEQHSHKPKILKDNNKNSDTRKSDWLRSVQLWNPDPPAKEDVPRKTSVVEVKRNGGAFQPFHREDNVGKPNNNNSSAGKSLSPAPVPATSSTAGAVSGGIAGSNKKSDEKEGQSQRKQRRNWSPELHKRFLQALQQLGGPDSATPKQIRELMKVDGLTNDEVKSHLQKFRLHTRRPSPMIPNNANPQTAPFVLVGNIFVQPPEYAAAVATSTASGEVTTVPGPGGIYAPVAAHPPAIPHMPAPMVKKPQLKQLEEAEHSHSEERVNHSEGAVHSNSPDSSSSTHTTSNSPGY 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1965 386 Gene3D - 210 268 - -
Dere09g1965 386 MobiDBLite consensus disorder prediction 332 386 - -
Dere09g1965 386 NCBIfam myb-like DNA-binding domain, SHAQKYF class 211 266 IPR006447 GO:0003677
Dere09g1965 386 MobiDBLite consensus disorder prediction 364 386 - -
Dere09g1965 386 MobiDBLite consensus disorder prediction 198 217 - -
Dere09g1965 386 MobiDBLite consensus disorder prediction 160 192 - -
Dere09g1965 386 MobiDBLite consensus disorder prediction 121 140 - -
Dere09g1965 386 Pfam Myb-like DNA-binding domain 213 262 IPR001005 -
Dere09g1965 386 MobiDBLite consensus disorder prediction 84 116 - -
Dere09g1965 386 MobiDBLite consensus disorder prediction 149 217 - -
Dere09g1965 386 MobiDBLite consensus disorder prediction 344 363 - -
Dere09g1965 386 SUPERFAMILY Homeodomain-like 209 269 IPR009057 -
Dere09g1965 386 MobiDBLite consensus disorder prediction 95 116 - -
Dere09g1965 386 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 8 356 IPR044787 GO:0003700|GO:0006355
Dere09g1965 386 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 208 268 IPR017930 -
Dere09g1965 386 Coils Coil 1 28 - -
Dere09g1965 386 FunFam Myb family transcription factor 210 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1965 Dere-ChrDere09 25966897 25969048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1965 10 326 G2-like Transcription Factor Family AT1G68670 49.550 3.01e-79 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Dere09g1965 Myb_DNA-binding 9.9e-07 CL0123