Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1964 ATGCAAACTCAGTACTCTAACTTCTTCATGTCGTCCTGCTTGGAAGCAGAAGAAGTAGTCGACGACGAGGACTCCATTTCCCTCTCTCTGGGCCTTCCAGGCCAACGCAACATTATCAACCCCAAGGTAATCTCCACTATCTCCTCCTCATCATCCAACGACGTCGTATCTCTGCATCATCATCATCTTCATCACCAAAACCCTACCTCTGATCATGGCGTCACGGTGGCCCTTCACATGGGCCTTCCGACCAACAGTGGTGCTACCAAACCCGACTCGTTAATGGGTTCTTCATCAGCGGGTCACGTTCCGGGTCAATATTGGATCCCTTCTCCTGCTCAGATCCTTATCGGGCCCACCCAGTTCTCTTGCTCTGTCTGCAACAAAACCTTCAACCGTTTCAATAACATGCAGATGCATATGTGGGGACATGGATCGCAGTATAGGAAAGGCCCTGAGTCTCTGAGAGGGGCAAAGCCAGCTTCTTCGATTCTGAGACTCCCATGTTACTGTTGCGCCGAAGGTTGCCGGAACAACATCTACCATCCGAGGTCGAGGCCGCTAAAGGACTTCAGAACCCTTCAGACACACTACAAACGGAAGCACGGGGCGAAGCCGTTCGGCTGCCGGAAGTGCGGGAAGCCGTTCGCTGTCAGAGGCGACTGGAGGACACACGAGAAGAACTGCGGGAAGCTCTGGTTCTGTATCTGTGGGTCCGATTTCAAGCACAAGAGGTCTCTCAAGGACCACGTCAGGGCCTTCGGCGACGGCCACGCTCCTCACACCGTGGAGAGCTGCGATCAGCTCGGTCGTGACCACGAAGAAGAAGGTGATGACGAGGATGATGATGAGGACGAGGATGATGATCCCAGTGAATTGTTGGTTTGTAGTAGTGAAAATCATGGGTCCATTTACTTTTGA 921 0.5266 MQTQYSNFFMSSCLEAEEVVDDEDSISLSLGLPGQRNIINPKVISTISSSSSNDVVSLHHHHLHHQNPTSDHGVTVALHMGLPTNSGATKPDSLMGSSSAGHVPGQYWIPSPAQILIGPTQFSCSVCNKTFNRFNNMQMHMWGHGSQYRKGPESLRGAKPASSILRLPCYCCAEGCRNNIYHPRSRPLKDFRTLQTHYKRKHGAKPFGCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVESCDQLGRDHEEEGDDEDDDEDEDDDPSELLVCSSENHGSIYF 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1964 306 ProSiteProfiles Zinc finger C2H2 type domain profile. 122 149 IPR013087 -
Dere09g1964 306 Gene3D Classic Zinc Finger 203 260 - -
Dere09g1964 306 ProSitePatterns Zinc finger C2H2 type domain signature. 124 144 IPR013087 -
Dere09g1964 306 SUPERFAMILY beta-beta-alpha zinc fingers 193 227 IPR036236 -
Dere09g1964 306 Gene3D Classic Zinc Finger 121 144 - -
Dere09g1964 306 PANTHER ZINC FINGER PROTEIN WIP2 56 280 IPR043584 GO:0003700|GO:0010468
Dere09g1964 306 SUPERFAMILY beta-beta-alpha zinc fingers 118 143 IPR036236 -
Dere09g1964 306 MobiDBLite consensus disorder prediction 259 306 - -
Dere09g1964 306 MobiDBLite consensus disorder prediction 273 293 - -
Dere09g1964 306 FunFam Zinc finger protein WIP2 176 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1964 Dere-ChrDere09 25952766 25954270 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1964 22 263 C2H2 Transcription Factor Family AT1G13290 71.371 4.78e-119 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere09g1964 None None None