Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1961 ATGGATGGAGGAAGTTGTATAGACGAAAGTACAACGACTGACTCGATATCTGCGTCGCTTTCTCCGGTGACGACTCCGTCGAAGAAGTTATCGTCGCCGCCGCCGAACAGTATCTGCCGCGTCGGGAGCGGGGCCAGCACCGTCGTGGACTCTGAGGGAGTTGGTGGTGAAGCCGAGTCCCGGAAGCTCCCGTCGTCCAAATTCAAAGGCGTCGTCCCGCAGCCCAATGGCCGTTGGGGTGCTCAGATTTACGAGAAGCATCAGAGAGTCTGGTTGGGCACTTTCAACGAAGAGGACGAAGCCGCCAGAGCCTACGATATCGCCGCGCAGCGTTTCCGCGGTCGAGACGCCGTCACCAATTTCAAACCCCTGGCCTCCGGGACCGGCGCCGACGACGGCGACATCGAGATGGCGTTCCTCAACGCGCATTCCAAACCCGAGATCGTCGACATGCTCAGAAAGCACACTTACAATGACGAGCTCGAGCAGAGCAAGCGGAACTATGGATTGACGTTGGACGGAAACGGGAAACTAGTAAACAAGGAAGGATCCACGGCGTCGGGTTATCCCGGGTCGGGTCGGGCTTACGGAGCGCGTGAGCTGCTATTCGAGAAAGCGGTGACGCCGAGCGACGTGGGAAAGCTGAACCGGCTGGTGATACCGAAGCAGCACGCGGAGAAGCACTTCCCGTTGCCGTTACCGGGGGGAAACTCCACACCGTGCGCGGCGGCGACGGTGGCCACGAAGGGGCTGCTATTGAATTTTGAGGACGGAGGCGGAAAGGTGTGGAGGTTTCGGTACTCGTATTGGAATAGTAGCCAGAGCTACGTGCTGACCAAAGGGTGGAGCCGGTTCGTGAAGGAGAAGAACCTCAAAGCCGGAGACACGGTTTTTTTCTACCAGTCCACCGGACCGGACAAGCAGCTGTACATTGATTGGAAAGCCAGGACTAGTACTAGTACTACTACTACGGAAGGGGGGGAGTTGTTCGAATCGGCCGGTCCAGCGGTGGAGCCGGTTCAGATGGTGAGACTGTTTGGGGTCAACATTTTGAAAATTCCCGGTTCAGATGCTATTGCTGCTGCTGGTGTGTGCTGTAATGGGAAGAGAAGAGAGATGGATCTGTTCACGTTGGAGTGTACCAAAAAGCCAAAGATCATAGGAGCTTTGTAA 1173 0.5652 MDGGSCIDESTTTDSISASLSPVTTPSKKLSSPPPNSICRVGSGASTVVDSEGVGGEAESRKLPSSKFKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAQRFRGRDAVTNFKPLASGTGADDGDIEMAFLNAHSKPEIVDMLRKHTYNDELEQSKRNYGLTLDGNGKLVNKEGSTASGYPGSGRAYGARELLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLPLPGGNSTPCAAATVATKGLLLNFEDGGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVFFYQSTGPDKQLYIDWKARTSTSTTTTEGGELFESAGPAVEPVQMVRLFGVNILKIPGSDAIAAAGVCCNGKRREMDLFTLECTKKPKIIGAL 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1961 390 MobiDBLite consensus disorder prediction 1 69 - -
Dere09g1961 390 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 62 360 IPR044800 GO:0003700
Dere09g1961 390 SUPERFAMILY DNA-binding domain 66 122 IPR016177 GO:0003677
Dere09g1961 390 ProSiteProfiles AP2/ERF domain profile. 67 122 IPR001471 GO:0003700|GO:0006355
Dere09g1961 390 FunFam AP2 domain-containing protein RAP2.8 66 123 - -
Dere09g1961 390 MobiDBLite consensus disorder prediction 1 44 - -
Dere09g1961 390 SUPERFAMILY DNA-binding pseudobarrel domain 201 311 IPR015300 -
Dere09g1961 390 SMART rav1_2 67 128 IPR001471 GO:0003700|GO:0006355
Dere09g1961 390 Pfam AP2 domain 66 114 IPR001471 GO:0003700|GO:0006355
Dere09g1961 390 Pfam B3 DNA binding domain 203 313 IPR003340 GO:0003677
Dere09g1961 390 CDD B3_DNA 202 300 IPR003340 GO:0003677
Dere09g1961 390 Gene3D AP2/ERF domain 66 123 IPR036955 GO:0003700|GO:0006355
Dere09g1961 390 ProSiteProfiles B3 DNA-binding domain profile. 203 317 IPR003340 GO:0003677
Dere09g1961 390 Gene3D - 192 327 IPR015300 -
Dere09g1961 390 CDD AP2 66 121 IPR001471 GO:0003700|GO:0006355
Dere09g1961 390 SMART B3_2 203 317 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1961 Dere-ChrDere09 25919065 25920237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1961 5 390 B3 DNA Binding Superfamily AT1G25560 61.168 1.00e-148 423
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Dere09g1961 B3 1.6e-27 CL0405