Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere09g1959 | ATGGAGACGCTATCAGTGAAGGACGCGTTCCAGAAGCTAGAGAAGGTAGGGGAAGGGACGTACGGGAAGGTGTGCAGAGTGATTGATAAATCTATTAGGGAGATCGTTGCCCTAAAAAAGACTCATCTCCACGAGGACGAAGAAGGCGTCCCTCCCACCACTCTCCGTGAAGTTTCCATTCTACGTATGCTCTCCACGGATCCTCATGTCGTCAGGTTGTTGGATGACGTTGCTTTCTGCCACGGTCATGGAATCTTACATAAAGATTTGAAGCCCCATAACCTCTTGATGGACCGTAAGATCATGGTGCTGAAAATCGCTGATCTTGGACTGGCTCAAGCATATACTGTACCAATCAAGAAATATACTCATGAGATACTGACCCTATGGTATAGAGCTCCTGAAGTGCTTTTGGGAGCTACTCATTACTCAATGGCAATGGATATTTGGTTTGTTGGTTGCATATTTGTAGAACTAGTTACAAAGCAATCATTCTTCCCTGTTGATTCCGAGCTGCAACAACTTCTGCACATATTCAGGCTTTTGGGAACACCAAATGAAGAGATGGAGGCTAGGCTGAAAAGAGGAGAAGAAGACGAGGAGGAGAGCTCATGA | 615 | 0.4569 | METLSVKDAFQKLEKVGEGTYGKVCRVIDKSIREIVALKKTHLHEDEEGVPPTTLREVSILRMLSTDPHVVRLLDDVAFCHGHGILHKDLKPHNLLMDRKIMVLKIADLGLAQAYTVPIKKYTHEILTLWYRAPEVLLGATHYSMAMDIWFVGCIFVELVTKQSFFPVDSELQQLLHIFRLLGTPNEEMEARLKRGEEDEEESS | 204 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere09g1959 | 204 | ProSiteProfiles | Protein kinase domain profile. | 1 | 204 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Dere09g1959 | 204 | SUPERFAMILY | Protein kinase-like (PK-like) | 6 | 193 | IPR011009 | - | |
| Dere09g1959 | 204 | ProSitePatterns | Protein kinases ATP-binding region signature. | 16 | 39 | IPR017441 | GO:0005524 | |
| Dere09g1959 | 204 | Pfam | Protein kinase domain | 76 | 190 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Dere09g1959 | 204 | Pfam | Protein kinase domain | 10 | 75 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Dere09g1959 | 204 | Gene3D | Phosphorylase Kinase; domain 1 | 7 | 77 | - | - | |
| Dere09g1959 | 204 | PANTHER | CELL DIVISION PROTEIN KINASE | 8 | 75 | - | - | |
| Dere09g1959 | 204 | Gene3D | Transferase(Phosphotransferase) domain 1 | 78 | 197 | - | - | |
| Dere09g1959 | 204 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 85 | 97 | IPR008271 | GO:0004672|GO:0006468 | |
| Dere09g1959 | 204 | SMART | serkin_6 | 10 | 204 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere09g1959 | Dere-ChrDere09 | 25870243 | 25871013 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere09g1959 | 3 | 189 | Core Cell Cycle Gene Families | AT1G20930 | 60.669 | 6.43e-98 | 285 |
Transcription factors information