LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere09g1958	ATGGCCACTGTCGCTGCAGCTCGAGGAATAGGGATAGGAGTGACGAAGCTCCAAAAACCCCACCACTTCAACCCCAACAAGTCCGTCTTTTTCGGCCAGAAACTTCGAATCAAACACTCTTTGATAGAGTCCCAATGCAGTGGAAGAATCACCACCCTCTCGGACCCTAAGTCTTTCGTGGCTTTCGCTCTTGGAGGCGAATGGCTCGATTCGATTCACCACCTCTTCGTGGGTGTCGGGGTTGGGCTTCCTTGTACGGTTATGGAGTGCGGCGACATAATTTACAGAAGCACTCTTCCCAAGTCGACTGGCTTGACGATTACAGCACCTGGGGTGGTTCTGGCTCTCGGTGCTTTGTCCTACCTCTGGGCTACGCCTGGCGTGGCCCCTGGTTTCTTTGACATGTTCGTTCTTGCTTTTGTTGAAAGATTGTTCAGACCCACGTACAGAAAGGATGACTTTGTCCTGGGAAAGAAGTTGGGGGAGGGATCATTTGGAGTGGTTTATAGGGTTTCATCGACCAAGAAGCCCTCTTCAAAGGAAGGTGACTTGGTCTTGAAGAAGGCTACTGAATATGGTGCAGTAGAAATTTGGATGAATGAGCGTGTTCGAAGAGCTTGTGCAAGCAGCTGTGCTGATTTTGTTTACGGCTTCCTTGAGAATTCTACAAAGAAAGGTGCTGAATACTGGCTTATATGGAAGTTCGAAGGGGATGCCACGCTAGCGGACCTACTACAGAGTAAAGAGTTCCCATATAATGTTGAAACAATGATTCTGGGCAAAGTCCAGGACTTGCCTAAGGGACTGGAAAGAGAAAATAGAATAATTCAAACAATTATGAGGCAGATCTTGTTTGCATTGGATGGTCTTCACTCAACTGGAATCGTGCACAGGGATATTAAGCCCCAGAACATTATTTTCTCTGAAGAATCTCGTACATTCAAGATCATTGATCTCGGAGCTGCAGCAGATCTGCGAGTTGGCATCAATTATATTCCTAATGAGTTTCTTTTGGATCCAAGATATGCTGCCCCAGAGCAGTACATCATGAGCACTCAAACTCCCTCTGCACCCTCAGCTCCAGTTGCAACTGCACTTTCTCCAGTCCTATGGCAGTTGAATCTACCTGACAGATTTGATATCTATAGCGCCGGTCTAATATTTCTTCAAATGGCATTCCCTGGATTACGCACTGATAACAGCCTCATACAATTAAACCGTCAGTTGAAGAGGTGTGACTATGACTTGGTTGCATGGAGAAAAAGTGTAGAACCTCGCTGTGGTACTGAGCTCAGGAGGGGCTTTGAGCTTCTGGATTTAGATGGTGGAATTGGATGGGAACTTCTGACATCAATGGTCCGATACAAAGCACGGAAAAGACTCAGTGCAAAAGGAGCATTAGCCCATCCCTACTTTGACAGGGAAGGCTTGTTGGCACTTTCTTTTATGCAAAATCTGAGGCTGCAGCTCTTACGAGCAACACAACAGGATTATGGGGAAGCAGCCGACTGGATTATTCGGCTCATGGCCAAATCTGGAACGGCAGAAGATGGAGGATTTACTGAAGCTCAGCTCCAGGAACTAAAAGAAATTAAACCGAAGAAGAAGGATAGTGCACAAAGAAATGCTCTAGCTTCTGCTCTCAAACTTCAGAGGAAAATTATAAGAACCTTAAATGAGAGTATGGATGAGCTTAACAGACGCAGGAAAAGCCTTTGGTGGAGCAGATGGATCCCCCGAGAGGAATGA	1749	0.4637	MATVAAARGIGIGVTKLQKPHHFNPNKSVFFGQKLRIKHSLIESQCSGRITTLSDPKSFVAFALGGEWLDSIHHLFVGVGVGLPCTVMECGDIIYRSTLPKSTGLTITAPGVVLALGALSYLWATPGVAPGFFDMFVLAFVERLFRPTYRKDDFVLGKKLGEGSFGVVYRVSSTKKPSSKEGDLVLKKATEYGAVEIWMNERVRRACASSCADFVYGFLENSTKKGAEYWLIWKFEGDATLADLLQSKEFPYNVETMILGKVQDLPKGLERENRIIQTIMRQILFALDGLHSTGIVHRDIKPQNIIFSEESRTFKIIDLGAAADLRVGINYIPNEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFDIYSAGLIFLQMAFPGLRTDNSLIQLNRQLKRCDYDLVAWRKSVEPRCGTELRRGFELLDLDGGIGWELLTSMVRYKARKRLSAKGALAHPYFDREGLLALSFMQNLRLQLLRATQQDYGEAADWIIRLMAKSGTAEDGGFTEAQLQELKEIKPKKKDSAQRNALASALKLQRKIIRTLNESMDELNRRRKSLWWSRWIPREE	582

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere09g1958	582	Coils	Coil	548	568	-	-
	Dere09g1958	582	Pfam	Protein kinase domain	155	347	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere09g1958	582	PANTHER	SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED	66	557	-	-
	Dere09g1958	582	Gene3D	Phosphorylase Kinase; domain 1	140	234	-	-
	Dere09g1958	582	FunFam	Serine/threonine-protein kinase STN7, chloroplastic	263	477	-	-
	Dere09g1958	582	SUPERFAMILY	Protein kinase-like (PK-like)	139	474	IPR011009	-
	Dere09g1958	582	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	295	307	IPR008271	GO:0004672\|GO:0006468
	Dere09g1958	582	CDD	STKc_SNT7_plant	158	472	-	-
	Dere09g1958	582	ProSiteProfiles	Protein kinase domain profile.	154	472	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere09g1958	582	SMART	serkin_6	154	472	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere09g1958	582	Gene3D	Transferase(Phosphotransferase) domain 1	262	476	-	-
	Dere09g1958	582	ProSitePatterns	Protein kinases ATP-binding region signature.	160	187	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere09g1958	Dere-ChrDere09	25861261	25865854	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere09g1958	272	473	Core Cell Cycle Gene Families	AT2G38620	30.516	1.10e-16	78.2

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	Group-Pl-4	Dere09g1958		Pkinase	5.3e-20	CL0016