Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1954 ATGCTGGTTCGGAGGAGAATGATGAGTTGGAGGAGGGTGGGCAAGTCTCTGCAAGCTTTTGTAGCCCATGGCTTACTCTTCTCTTTCACGCTTCTGCTTGTGCTCAAGCTTGACCATGTCGTTCATTACTCATGGTGGACCATATTTTCACCTCTATGGCTTCTTCATGCTGTTGTAGCACGAGGCAGGTTTTCCTTGCCTGCTCCTACAATGCCTCATGATCGCCATTGGGCTCCGTGTCATGCCATTGTAGCTACACCTTTACTTGTTGCTTTTGAGCTACTTCTTTGTATACATCTCGAGATCAGTTATGTGGTAAATTTAAAGATTGTCTTCTTGCCCCTATTGGCTTTTGAAGTGGCAATTTTGATTGATAACATCAGGATGTGTAGGGCTTTAATGCCTGGAGATGATGAAAATATGAGCGATGAAGCAATATGGGAAACCCTTCCTCACTTCTGGGTTGCAATATCCATGGTCTTCTTTATCGCTGCTACAGTATTCACTCTTCTAAAGATATGCGGCGATATTGCTGCTCTAGGATGGTGGGACTTGTTTATAAACTTTGGCATTGCAGAGTGCTTTTCCTTTCTTGTTTGTACAAAGTGGTACAATCCTACAATTCATGGAAAATGTCACATTGACATGACAGATCCTAGCCCATCATCGTTTTCATCATCATTTACTATAAGATACCTGGACTGGGATAGAGGCTCGGTGGTTTCCACAGATGAAGAGAGGCAGCATAGTGGGCTATGCAGTCTGCAGGACATTGGTGGGCATATTATGAAAATTCCATTTATTGCTTTCCAAATTCTGCTGTTTATGCATTTAGAGGGAACACCACCTAGTGCCAGAACTATGTCATGTGGGGTTGTTTTTTCTCCCCTTTTCTTGTTGCAAGGAGCTGGGGTTTTATTTGCTGTTTACAGATTAGTAGAGAAATTAGTTCTTCTAGTTTATAGTGGAGATGTTTCTGGAAGATACTCAGATATAGCATTAAAAGCCCGTGATTGTTTTGGGTTCTTGCATCATGGCTCAAGGTTGCTAGGTTGGTGGTCAATAGATGAAGGAAGTCGAGAGGAACAAGCCAGAGTTTATTGTGCTGGGAGTTCAGGGTATAACACTTTCTCCCCGGATATGGTGAAGAAAATGCCTAAATCAGATCTTGTTGAGCAGATCTGGAAACTACAAGCTGCACTAGGTGAACAGACAGAGATTACAAAATTTAGCCAGCAGGAGTATGAAAGACTCCAAAACGAAAGGATCCTTTGTAGAGTTTGCTTCGAAGAGCAGATTAATGTGGTCCTGCTTCCATGCAGGCATCGTATTCTTTGCAGTACTTGTGGTGAAAAGTGCAAGAGGTGCCCTATCTGCCGTGTCTCCATTGAAGAACGAATGCCTGTATATGATGTATAG 1419 0.4285 MLVRRRMMSWRRVGKSLQAFVAHGLLFSFTLLLVLKLDHVVHYSWWTIFSPLWLLHAVVARGRFSLPAPTMPHDRHWAPCHAIVATPLLVAFELLLCIHLEISYVVNLKIVFLPLLAFEVAILIDNIRMCRALMPGDDENMSDEAIWETLPHFWVAISMVFFIAATVFTLLKICGDIAALGWWDLFINFGIAECFSFLVCTKWYNPTIHGKCHIDMTDPSPSSFSSSFTIRYLDWDRGSVVSTDEERQHSGLCSLQDIGGHIMKIPFIAFQILLFMHLEGTPPSARTMSCGVVFSPLFLLQGAGVLFAVYRLVEKLVLLVYSGDVSGRYSDIALKARDCFGFLHHGSRLLGWWSIDEGSREEQARVYCAGSSGYNTFSPDMVKKMPKSDLVEQIWKLQAALGEQTEITKFSQQEYERLQNERILCRVCFEEQINVVLLPCRHRILCSTCGEKCKRCPICRVSIEERMPVYDV 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1954 472 SMART ring_2 425 459 IPR001841 -
Dere09g1954 472 Pfam Zinc finger, C3HC4 type (RING finger) 424 465 - -
Dere09g1954 472 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 401 471 IPR013083 -
Dere09g1954 472 Pfam Transmembrane Fragile-X-F protein 35 300 IPR019396 -
Dere09g1954 472 SUPERFAMILY RING/U-box 416 468 - -
Dere09g1954 472 FunFam Kinesin-like protein KIN-7D, mitochondrial 402 470 - -
Dere09g1954 472 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 8 472 - -
Dere09g1954 472 ProSiteProfiles Zinc finger RING-type profile. 425 460 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1954 Dere-ChrDere09 25770533 25785534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1954 8 472 C3H Transcription Factor Family AT1G73950 65.751 0.0 627