Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1952 ATGATTACACAAATGGTCTTGGGGAAGCAGAAAGGATGGCGTGGACATAGCCAAAGAGCTTTTTGGCCCTTAGTCGGTCGACAATCTGCTTGTGTTCACTCTCCTCCTGCTTCTGCTTCTTTTGTTTGTAGAAAGAAGATCCTCCACACTCTGGTTTGTGTTATAGATAATATAAGTAGGATGAAAAAGGAGGAAGATCAAGGACAGTGTTCATCTTCTTCTCAGGCCATGAATAACATTCAGAGCTATCAAGAACAGCTTTTTCTTCAGCAAATGATGCAGCAGCAGCAAAACGGCGACGTTTTCGGAGGTAATTCTAGTAATAATAACAACAACGGAAGAGGATTGATGTTCCCTGAGATTTCTCCAATCTTTCAGCCGCCACCACCGTCGTGGTCTCTCCCTCCGGTTCACTCCTTCAACCCGGACCGAGAGCCCGACCCGTTTTTCGTCTCTCCACCTTCCTCTTCTCTATACGCGGGTCTCTTCAACCGGAGGGTTCCTTCTCTGCAGTTCGCTTACGACGGTCCGTCCAATTCCGATCATCACCATCTCCGGATCATATCCGACACCCTCGGTGTCGGACCCGTGGGTCAACCCGGCTCAGCTCCCTTCAGCCTCCAAGCCGAGCTTGGCAAGATGACGGCTCAAGAAATCATGGACGCCAAAGCTCTCGCGGCTTCCAAAAGCCACAGCGAAGCCGAAAGAAGACGCCGCGAGAGAATCAATAACCATCTCGCCAAGCTCCGAAGCTTATTGCCCAGTACAACCAAAACAGACAAAGCTTCGTTACTAGCAGAAGTAATCCAGCACGTGAAGGAGCTGAAGCGTCAAACTTCAATAATTGCAGAAACAAGCCCAGTGCCCACAGAGACCGATGAGCTAACCGTAGACGACGCTTCCGACGAGGACGGCAGGTTGGTGATCAAAGCCTCGCTTTGCTGCGAAGACAGGTCTGATCTCTTGCCCGATCTGATCAAGACCTTGAAGGCCCTCAGGTTAAGAACCCTCAAGGCCGAGATCACCACGCTCGGAGGGCGCGTGAAGAACGTGCTGTTCATCACTGGGGAAGAAGACGACTTGAGTGGTAGTAGTAGTAGTGAGGAGCAGAGACAGCAGTATTGTATAAGCTCCATACAAGAGGCACTGAAGGCAGTGATGGAGAAGAACGGTGGTGGTGATGAGAATGGGAGTGTTAAGAGGCAAAGAACTAATAATAGTATCAATATCCTTGAACACAACAGGTCTTTATGA 1254 0.496 MITQMVLGKQKGWRGHSQRAFWPLVGRQSACVHSPPASASFVCRKKILHTLVCVIDNISRMKKEEDQGQCSSSSQAMNNIQSYQEQLFLQQMMQQQQNGDVFGGNSSNNNNNGRGLMFPEISPIFQPPPPSWSLPPVHSFNPDREPDPFFVSPPSSSLYAGLFNRRVPSLQFAYDGPSNSDHHHLRIISDTLGVGPVGQPGSAPFSLQAELGKMTAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTSIIAETSPVPTETDELTVDDASDEDGRLVIKASLCCEDRSDLLPDLIKTLKALRLRTLKAEITTLGGRVKNVLFITGEEDDLSGSSSSEEQRQQYCISSIQEALKAVMEKNGGGDENGSVKRQRTNNSINILEHNRSL 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1952 417 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 230 282 IPR036638 GO:0046983
Dere09g1952 417 PANTHER TRANSCRIPTION FACTOR BHLH30 82 410 IPR045847 GO:0003700|GO:0006355
Dere09g1952 417 SMART finulus 232 281 IPR011598 GO:0046983
Dere09g1952 417 FunFam transcription factor bHLH30 221 284 - -
Dere09g1952 417 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 226 275 IPR011598 GO:0046983
Dere09g1952 417 MobiDBLite consensus disorder prediction 397 417 - -
Dere09g1952 417 CDD bHLH_AtAIG1_like 221 298 - -
Dere09g1952 417 Pfam Helix-loop-helix DNA-binding domain 229 275 IPR011598 GO:0046983
Dere09g1952 417 Gene3D - 221 282 IPR036638 GO:0046983
Dere09g1952 417 MobiDBLite consensus disorder prediction 389 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1952 Dere-ChrDere09 25741672 25745771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1952 62 412 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 58.177 7.81e-112 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere09g1952 HLH 2.2e-12 No_clan