Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1936 ATGCCACCTCATGAGCAAGAAGCCACCACAGTTGCTACTGTCATGCCAAACATTCAGATTCAGACCGTCGTGAACCGGCCGGAGAACTGCTCGGTCCATGCCGAACCCATCGATTCGACCAGTAATGGTGGACAACCGGGTCTGGACACTGACATTTCCTTCCACGATCACCCCCCAACAACAGCAAGATTCTCAATTCTTAACCAATCCCTGCGTCCCGTCACCCTCAAATTTGAAGACTTCTCGTACACTGTAACAATCGGAAGCAAGAAGAGTGGGTGTGCATGTGTCTGTGTCTCTTCGCAAGAGCCGAAGCTGACCCGGACGATACTCAACGGCGTGACGGGGATTGTCCGGTCCGGCGAGCTGATGGCAATGCTGGGTCCATCCGGCAGCGGGAAGACCACGCTGCTCACGGCCCTCGCAGGCCGGCTCGCCGGAAAAGTTTCAGGCTCTATAACCTACAATGGCCACCCCTTCTCCAGCTCCATGAAGCGCAAGACCGGGTTTGTCCCGCAAGATGACATCCTCTACCCTCACCTCACTGTCCATGAGACGCTCACTTTTGCGGCTTTGCTAAGACTTCCCAAAAGTCTCACCAGAGAAGAGAAAATGGAGCACGCCGAGGCCGTCATGGCGGAGCTCGGGCTAACCAGGTGCTGCAACAGCCCGGTCGGGGGCGGCACCAGCTTGGTACGAGGAGTTTCCGGCGGCGAGCGAAAGCGGGTCAGTATCGGGCAGGAGATGATGGTGAACCCGAGTCTGCTATTGCTGGACGAGCCGACGTCCGGGTTGGACTCCACGACGGCACAACGCATTGTGGCGATGTTGCGGCGGTTGGCACGCGGTGGCCGGACGGTGGTGACGACGATTCATCAGCCTTCGAGCCGGTTGTATAGGATGTTTGACAAGGTGGTGGTGTTATCCGACGGGTACCCGATTTACAGTGGAAACGCGGGTCAGGTCATGGAGTATCTTGGGTCCATCGGGTTTGTGCCCACATTCAATTTTGTCAACCCGGCAGATTTTCTACTTGACTTGGCTAATGGCATAGTTGCTGATGTTAAACAGGATGATCAAACAGATATACATGGAACATTAGACCACCATGAGGACCAAGCTTCAGTCAAACAGTCCCTAGTTTCATCCTACAAGAAGGTTTTATACCCTGCTCTGAAACAAGAGATTCAGCAAAGCAACAGAGACCTTACTGCTCTTACATCAGGAACACCAAGAAGTTCAGAGAACCAATGGAACACCAGCTGGTGGGAGCAGTTCAGGGTGCTTCTGAAGAGGGGTTTAAAAGAGAGGAGGCATGAATCTTATTCAGGCTTAAGGATTTTCCAAGTCTTGTCTGTCTCTATTCTCTCTGGACTTCTGTGGTGGCATTCTGATCCTTCAAAAATACAAGATCAGGTGGGCCTCCTCTTCTTCTTTTCTATCTTCTGGGGTTTCTTCCCTCTATTCAATGCCATCTTAGCATTCCCTCTAGAGAGGCCAATGCTAACAAAAGAGAGATCATCAGGAATGTACCATCTCTCCTCCTACTATATGGCCAGAATAGTTGGAGACTTACCAATGGAGCTAGTGCTTCCCACTATCTTTGTAACCATCTCCTATTGGATGGGAGGCCTCAAGCCTTCACTTCAAACCTTTGTGTTAACCCTCTTGATCCTCCTCTTCAATGTCCTAGTCTCCCAAGGAATAGGCCTAGCCCTTGGAGCCATTCTAATGGATGTGAAGCAAGCCACAACTTTGGCTTCAGTGACCATGCTTGTGTTTTTGTTAGCTGGTGGTTATTACATTCAGAAAATGCCTTCTTTTATAGCTTGGCTCAAGTACTTTTCATTTAGTCACTATTGCTATGAACTTTTGGTAGGAGTGCAATATTCAAAAGATCAAGTTTATGAGTGCGGTGGCCAAGGGTTACATTGTAGGGTGGTGGATTTTCCTGCCATAAAGTGCTTGGATCTTAATAATTTGTGGGGCGATGTGGCTGCATTGACTTTAATGTTTATTGGATACAGAATTGTGGCTTATTTAGCTTTGAGGATGAGGTAG 2061 0.4978 MPPHEQEATTVATVMPNIQIQTVVNRPENCSVHAEPIDSTSNGGQPGLDTDISFHDHPPTTARFSILNQSLRPVTLKFEDFSYTVTIGSKKSGCACVCVSSQEPKLTRTILNGVTGIVRSGELMAMLGPSGSGKTTLLTALAGRLAGKVSGSITYNGHPFSSSMKRKTGFVPQDDILYPHLTVHETLTFAALLRLPKSLTREEKMEHAEAVMAELGLTRCCNSPVGGGTSLVRGVSGGERKRVSIGQEMMVNPSLLLLDEPTSGLDSTTAQRIVAMLRRLARGGRTVVTTIHQPSSRLYRMFDKVVVLSDGYPIYSGNAGQVMEYLGSIGFVPTFNFVNPADFLLDLANGIVADVKQDDQTDIHGTLDHHEDQASVKQSLVSSYKKVLYPALKQEIQQSNRDLTALTSGTPRSSENQWNTSWWEQFRVLLKRGLKERRHESYSGLRIFQVLSVSILSGLLWWHSDPSKIQDQVGLLFFFSIFWGFFPLFNAILAFPLERPMLTKERSSGMYHLSSYYMARIVGDLPMELVLPTIFVTISYWMGGLKPSLQTFVLTLLILLFNVLVSQGIGLALGAILMDVKQATTLASVTMLVFLLAGGYYIQKMPSFIAWLKYFSFSHYCYELLVGVQYSKDQVYECGGQGLHCRVVDFPAIKCLDLNNLWGDVAALTLMFIGYRIVAYLALRMR 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1936 686 ProSitePatterns ABC transporters family signature. 235 249 IPR017871 GO:0005524|GO:0016887
Dere09g1936 686 Pfam ABC-2 type transporter 292 357 IPR043926 GO:0140359
Dere09g1936 686 CDD ABCG_EPDR 73 317 - -
Dere09g1936 686 SMART AAA_5 120 313 IPR003593 GO:0016887
Dere09g1936 686 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 76 335 IPR003439 GO:0005524
Dere09g1936 686 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 51 680 - -
Dere09g1936 686 FunFam ABC transporter G family member 22 98 329 - -
Dere09g1936 686 Pfam ABC-2 type transporter 424 630 IPR013525 GO:0016020|GO:0140359
Dere09g1936 686 Gene3D - 97 329 IPR027417 -
Dere09g1936 686 Pfam ABC transporter 111 263 IPR003439 GO:0005524
Dere09g1936 686 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 108 329 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1936 Dere-ChrDere09 25512613 25517169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1936 119 324 Calmodulin-binding Proteins AT2G36910 24.883 9.70e-12 66.6