Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1935 ATGGCTGGGTTGGAGGAATTGAGAAAAAAACTTGCACCTTTATTTGATGCTGAGAAGGGCTTCTCGACAGGATCAACCTTGGATCCTTGTGATTCGTACACGTTATCAGATGGTGGAACTGTTAACTTATTGAGTAGATCATACGGGGTGTACAATATAAACGAGCTTGGACTACAAAAATGTACGTCTCGATCTGTAGATGAAACTGATCACAGTGAAAAAACATATAGATGTGCTTCGCACGAGATGAGAATATTTGGAGCAATTGGTAGTGGTGCCAGTAGTATTGTGCAGAGAGCCATACATATACCAACTCATAGAATTATGGCATTGAAGAAGATCAACATCTTTGAGAAGGAGAAAAGGCAGCAGCTTCTTACTGAAATAAGGACATTATGTGAAGCACCTTGTTACCAGGGTCTTGTTGAATTCCATGGGGCATTCTACACTCCAGACTCTGGACAGATAAGCATAGCTTTGGAGTACATGGATGGAGGGTCACTTGCAGATATCTTAGCAATGCATAGAAGAATACCTGAACCTATCCTTTCGACCATGTTTCAGAAACTCCTACATGGGCTAAGCTATCTGCATGGAGTCAGACATTTAGTTCATAGAGACATAAAGCCAGCCAATTTACTTGTAAATCTCAAGGGGGAACCAAAAATTACTGATTTTGGTATCAGTGCTGGTTTAGAGAATTCAGTGGCAATGTGTGCTACATTTGTTGGAACTGTCACATATATGTCACCTGAGCGAATTCGAAATGATAGCTATTCTTTTCCTGCTGACATATGGAGCCTTGGTCTTGCTCTCCTTGAGTGTGGAACAGGAGAATTCCCGTATACAGCTAATGAAGGTCCTGTAAATCTTATGTTGCAGATCCTTGAAGATCCATCACCATCACCATCAAAACAGAAGTTTTCACCTGAATTCTGCTCCTTTGTTGGTGCTTGCTTACAGAAGGATCCAGATAGCAGGCCAACAGCAGAGCAGCTGCTTTTACACCCTTTTGTCACAAAGTATGAGAATGCTGAGGTAGATTTAGCAGGATTTGTTCGAAGTGTTTTTGATCCAACACAACGAATGAAGGACTTGGCTGATATGTTGACAATTCATTATTACTTGCTATTTGATGGACCTGATGACCTCTGGCATCATACTAGGAGCTTATATAATGAAGGTTCCACTTTCAGTTTCTCTGGGAAACAATATGTTGGTCCAAACAATATATTTCCAAAATTATCTAGTGTCCGAAGTACATTAGTTGGTGACTGGCCTCCTGAAAAGCTAGTGCATGTTGTTGAAAAGCTTCAATGTCGTGCCCATGCTGAAGACGGAGTTGCAATTAGGGTATCAGGATCCTTTATTATTGGTAATCAGTTTCTAATATGTGGAGATGGTATTCAAGTAGAGGGCTTGCCAAGCATTAAGGATCTTGGTATTGATATTTCTAGCAAGCGAATGGGTACATTTCATGAGCAGTTTATCATAGAACCGACCAATCTCATTGGATGCTACGTCATAGCCAACCAAGAGTTGTACATAAACCAATAA 1557 0.4066 MAGLEELRKKLAPLFDAEKGFSTGSTLDPCDSYTLSDGGTVNLLSRSYGVYNINELGLQKCTSRSVDETDHSEKTYRCASHEMRIFGAIGSGASSIVQRAIHIPTHRIMALKKINIFEKEKRQQLLTEIRTLCEAPCYQGLVEFHGAFYTPDSGQISIALEYMDGGSLADILAMHRRIPEPILSTMFQKLLHGLSYLHGVRHLVHRDIKPANLLVNLKGEPKITDFGISAGLENSVAMCATFVGTVTYMSPERIRNDSYSFPADIWSLGLALLECGTGEFPYTANEGPVNLMLQILEDPSPSPSKQKFSPEFCSFVGACLQKDPDSRPTAEQLLLHPFVTKYENAEVDLAGFVRSVFDPTQRMKDLADMLTIHYYLLFDGPDDLWHHTRSLYNEGSTFSFSGKQYVGPNNIFPKLSSVRSTLVGDWPPEKLVHVVEKLQCRAHAEDGVAIRVSGSFIIGNQFLICGDGIQVEGLPSIKDLGIDISSKRMGTFHEQFIIEPTNLIGCYVIANQELYINQ 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1935 518 Gene3D - 358 517 - -
Dere09g1935 518 SUPERFAMILY Protein kinase-like (PK-like) 85 374 IPR011009 -
Dere09g1935 518 Pfam Protein kinase domain 87 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere09g1935 518 FunFam Mitogen-activated protein kinase kinase 3 363 517 - -
Dere09g1935 518 FunFam mitogen-activated protein kinase kinase 3 165 361 - -
Dere09g1935 518 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Dere09g1935 518 FunFam mitogen-activated protein kinase kinase 3 56 164 - -
Dere09g1935 518 Gene3D Transferase(Phosphotransferase) domain 1 159 354 - -
Dere09g1935 518 SUPERFAMILY NTF2-like 364 516 IPR032710 -
Dere09g1935 518 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 29 397 - -
Dere09g1935 518 ProSiteProfiles Nuclear transport factor 2 domain profile. 366 516 IPR018222 -
Dere09g1935 518 SMART serkin_6 83 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere09g1935 518 Gene3D Phosphorylase Kinase; domain 1 76 158 - -
Dere09g1935 518 ProSiteProfiles Protein kinase domain profile. 83 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere09g1935 518 ProSitePatterns Protein kinases ATP-binding region signature. 89 112 IPR017441 GO:0005524
Dere09g1935 518 CDD PKc_MAPKK_plant_like 84 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1935 Dere-ChrDere09 25505515 25511436 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1935 30 518 MAP Kinase Kinase Gene Family AT5G40440 77.914 0.0 815
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Dere09g1935 Pkinase 8.1e-58 CL0016