Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1926 ATGTCGGTGGCGTCACCGTCTCCGGCGTCGGTCACCGCCACACCACCACCAGCCCCCTCCTCCAATAGTAGTGCTCCGCCGTCCACCACCACTCCACCGCCACAACCGTCTTCCTCTTCACCAAGCAGTTCAACTTCACCACCGCCACAACCCATTGCGGACCCTCCGGCCCCTCCGACATCATCAAGCCCGCCAGCTCAGTCCCCACCTCCGGCGACTCCATCAGCTCCTCCTCCCGCTGTGCCATCGCCTCCTCCACCTGTTCCATCGTCGCCTCCGCCATTACAGCCACCTCAGGCGTCACCTTCCCCTCCATCTGGAACTCCTCCTCCTCCACAATTAGTTGCGCCCACATCACCACCACCTGCTTCGTCTACTGCTCCCCCGCCGTCTCCCCCTGTACTTCCATCTACACCACCACCGCAATCATCCGCTCCACCGGCGAGTTCTCCGCCAGCAAATTCGTCCGTTCCACCGCCATCCAACCTACCTCCCGTGCCTTCTCCGCCTACACCATCGTCAAACCCTCCAAACAATTCACCTCCACCGCCGGCATCAAGGTCCCCCGAAAATTCACCCCCACCTTCAGAAGCTGTGCCACCCCGTGGAAATTCACCTCCACCACCAGCATCTGTGCCACCACCAAATGATTCACCCCCTCCGCCGGCGGCTGTGCCACCACGAGGGTCATCTCCTCCACCACCAGCATCAACACCTCCTAGAAATTCACCTCCTCCTCCAGCTTCTAAACCTCCAAGCAGCGCACCGCCTCCCTCAAGGATAAGTCCTCCTACTCCACCTAGTTCTCAACCAAATCCATCTCCTTCAAATTCTACGGTAAACTCATCTCGTCCACCGCCTCCCATAATTCGGTTGGCTCCACCTCCGTCCTCACTTTTTTCACCACCAGCTTCTGAAACTCCCTCTCCACCTTCGGAAAACGGAGCAGAAAATTCGAATGCCGGTGATAGTAATGGCATCGGTACTGGTGGTGCAATTGCTATTGGTGTAGTGGGAGGTATTCTATTGCTTGCCTTAATTGGAATTGTTATCTGGTACATGAGGAGGCAAAAGAAACGGAGGCCTGGCAATGGTGGTTATGTCATGCCATCCAGTCTTGGTTCACCTCCCGAGTCAGATTCATCCTTTTTCAAGACACATTCTTCAGCTCCTCTTGTACAAAGTGGTTCCGGTAGTGACTCTGTGACTGTGTACACACCATCTGAGCCAGGTGGACTAGGCAACTCAAGGTCATGGTTTACATATGAAGAATTAGCCAAGGCCACAAATGGTTTTTCACCTCAAAATCTTTTGGGTGAGGGTGGATTTGGTTCCGTATACAAAGGATACCTACCTGATGGGAGAGAGATAGCAGTCAAACAGCTGAAAATTGGTGGAGGTCAGGGCGAGAGAGAATTCAAAGCTGAAGTGGAGATTATTAGTCGCATTCATCATCGCCATTTGGTTTCTTTGGTTGGATACTGCATTCTAGACAGCAGAAGGCTGCTTGTCTATGACTATGTCCCCAACAATACCCTTTATTATCATCTTCATGCGGAAGGTAGGCCTGTACTGAGCTGGGAAAAACGTGTGAAAATTGCTGCTGGCGCAGCTCGAGGAATTGCTTATCTCCACGAAGACTGCAATCCTCGGATTATTCACAGGGATATCAAGTCATCAAACATTCTTTTAGATTACAACTTTGATGCGCAAGTCTCAGACTTTGGGCTAGCCAAATTAGCTGCTGATGCAAATACACATATAACCACTCGTGTCATGGGAACTTTTGGATATGTTGCACCTGAGTATGCATCGAGTGGCAAATTGACTGAGAAGTCTGATGTATATTCTTTTGGGGTTGTGCTACTGGAGCTCATTACTGGACGCAAGCCAGTAGATGCATCTCAACCCTTGGGGGATGAGAGTCTAGTTGAATGGGCTCGACCTCTGCTGAGTCATGCACTTGATAATGAGGAATTTGAAGGTTTGACAGATCCTAGGCTTGAGAAGAACTATGTCGAAAGTGTGATGTTTCGCATGATTGAAATTGCTGCTGCTTGTGTGCGACATTCGGCTGCCAAGCGGCCTCGAATGGGACAGGTTGTTAGAGCTTTTGATAGCTTGGCAACTTCAGATATAACCAATGGAATGAGATTAGGGGAAAGTGAGGCATTTGACTCGGCGCAGCAATCTGCAGAAATAAGATTGTTTCGGAGGATGGCATTTGGTAGTCAAGATTATAGCACTGACTTCTTTAGCCAGACTAGCGTGGCTGTAAGAGGAAAGAAAGAAAACAGTAGAGTTTGCGAACATAGTGAGGATGAGTTGAGTGGTAAAAATGCAGCTTCTAAAGAAATGTCCTCGCCAGGGCCCCTTGATTTGCACGGTGCATATATTCTTGATCTAGAAATTGACTGCAAGCATATAGAAGAACCCTATTTTATGTAG 2448 0.5016 MSVASPSPASVTATPPPAPSSNSSAPPSTTTPPPQPSSSSPSSSTSPPPQPIADPPAPPTSSSPPAQSPPPATPSAPPPAVPSPPPPVPSSPPPLQPPQASPSPPSGTPPPPQLVAPTSPPPASSTAPPPSPPVLPSTPPPQSSAPPASSPPANSSVPPPSNLPPVPSPPTPSSNPPNNSPPPPASRSPENSPPPSEAVPPRGNSPPPPASVPPPNDSPPPPAAVPPRGSSPPPPASTPPRNSPPPPASKPPSSAPPPSRISPPTPPSSQPNPSPSNSTVNSSRPPPPIIRLAPPPSSLFSPPASETPSPPSENGAENSNAGDSNGIGTGGAIAIGVVGGILLLALIGIVIWYMRRQKKRRPGNGGYVMPSSLGSPPESDSSFFKTHSSAPLVQSGSGSDSVTVYTPSEPGGLGNSRSWFTYEELAKATNGFSPQNLLGEGGFGSVYKGYLPDGREIAVKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCILDSRRLLVYDYVPNNTLYYHLHAEGRPVLSWEKRVKIAAGAARGIAYLHEDCNPRIIHRDIKSSNILLDYNFDAQVSDFGLAKLAADANTHITTRVMGTFGYVAPEYASSGKLTEKSDVYSFGVVLLELITGRKPVDASQPLGDESLVEWARPLLSHALDNEEFEGLTDPRLEKNYVESVMFRMIEIAAACVRHSAAKRPRMGQVVRAFDSLATSDITNGMRLGESEAFDSAQQSAEIRLFRRMAFGSQDYSTDFFSQTSVAVRGKKENSRVCEHSEDELSGKNAASKEMSSPGPLDLHGAYILDLEIDCKHIEEPYFM 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1926 815 ProSitePatterns Serine/Threonine protein kinases active-site signature. 552 564 IPR008271 GO:0004672|GO:0006468
Dere09g1926 815 CDD TM_EGFR-like 330 361 - -
Dere09g1926 815 MobiDBLite consensus disorder prediction 10 273 - -
Dere09g1926 815 MobiDBLite consensus disorder prediction 763 780 - -
Dere09g1926 815 Gene3D Transferase(Phosphotransferase) domain 1 508 724 - -
Dere09g1926 815 SUPERFAMILY Protein kinase-like (PK-like) 413 703 IPR011009 -
Dere09g1926 815 CDD STKc_IRAK 438 708 - -
Dere09g1926 815 SMART serkin_6 432 709 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere09g1926 815 Pfam Protein tyrosine and serine/threonine kinase 436 704 IPR001245 GO:0004672|GO:0006468
Dere09g1926 815 MobiDBLite consensus disorder prediction 287 309 - -
Dere09g1926 815 ProSitePatterns Protein kinases ATP-binding region signature. 438 460 IPR017441 GO:0005524
Dere09g1926 815 FunFam Proline-rich receptor-like protein kinase PERK8 404 507 - -
Dere09g1926 815 MobiDBLite consensus disorder prediction 1 323 - -
Dere09g1926 815 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 341 754 IPR047117 -
Dere09g1926 815 MobiDBLite consensus disorder prediction 763 788 - -
Dere09g1926 815 MobiDBLite consensus disorder prediction 360 401 - -
Dere09g1926 815 Gene3D Phosphorylase Kinase; domain 1 408 507 - -
Dere09g1926 815 MobiDBLite consensus disorder prediction 374 401 - -
Dere09g1926 815 FunFam proline-rich receptor-like protein kinase PERK8 508 719 - -
Dere09g1926 815 ProSiteProfiles Protein kinase domain profile. 432 708 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1926 Dere-ChrDere09 25320642 25326788 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1926 237 701 Trihelix Transcription Factor Family AT1G68690 61.194 0.0 550
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Dere09g1926 PK_Tyr_Ser-Thr 6.4e-45 CL0016