Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1924 ATGCTTTTCAAGTACCTAAAGCTAGCTTCCACCCAGTTCAAATGGGTATTAGATTTTATTCTCTACCATCCACTCTACAGCCTCCATGTTCATCGGCCTCTAGAGTTTCCAGTAGTTACTGAAGAAGAAGTGAAGATATGGCATGCTCATGGAGAAGAAGAAGAAGTGGATTGTGCAGTGTGTCTGAGCAAGATAGGCGAAGGAGAAGAGGTTAGAGTGTTGAGGTGTGAGCATATTTTCCACAGGGAATGTCTGAATAAGTGGGTTGGCTTCAACAATTTCACTTGCCCTCTTTGTAGGGTTCTTGTTGATAAAAGGGCGTTTAATGGTGAGGTTGGAGGAGCACAGGTGCTTTTCTTTCAGTTTTGTTCTTTCAGTAGTAATTCTGATGATCTTGAGCCTGAGAATTGGCGGCTACGATTGAATAAAGAAAATTTAAGCATGCTCTTCAAGTACCTAAAGCTAGCTTCCATCCATGTCAAATGGGTATTAGATTTCCTTCTCTACCATCCTTTCTTCAACCTCCATGTTCATCGGCCTCAAGAGTTTCCCATAGTTACTGAAGAAGAAGAAGAAGTGAAGATTTGGCATCCTCATGGAGAAGAAGAAGAAGAAGTGGATTGTGCAGTGTGTCTCTGCAAGATAAGTGAAGGAGAAGAGGTTAGAGTGTTGAGGTGTGAGCATATTTTCCACAGGGAATGTCTGAATAAGTGGGTTGGCTTCAACAATTTCACTTGCCCTCTTTGTAGGGTTCATGTTCGTTCAGGAGCAAGATCATATAATGGTGAGGTTGGAGGAGCACAGGTTCTTTTCTTTCAGTTTTATTCTTTCAGTAGTAATTCTGATCGTGAGCCTGAGAATTGGTGGCTACGGTGA 876 0.4212 MLFKYLKLASTQFKWVLDFILYHPLYSLHVHRPLEFPVVTEEEVKIWHAHGEEEEVDCAVCLSKIGEGEEVRVLRCEHIFHRECLNKWVGFNNFTCPLCRVLVDKRAFNGEVGGAQVLFFQFCSFSSNSDDLEPENWRLRLNKENLSMLFKYLKLASIHVKWVLDFLLYHPFFNLHVHRPQEFPIVTEEEEEVKIWHPHGEEEEEVDCAVCLCKISEGEEVRVLRCEHIFHRECLNKWVGFNNFTCPLCRVHVRSGARSYNGEVGGAQVLFFQFYSFSSNSDREPENWWLR 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1924 291 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 256 IPR013083 -
Dere09g1924 291 PANTHER - 49 104 - -
Dere09g1924 291 ProSiteProfiles Zinc finger RING-type profile. 208 250 IPR001841 -
Dere09g1924 291 Pfam Ring finger domain 57 100 IPR001841 -
Dere09g1924 291 Pfam Ring finger domain 207 250 IPR001841 -
Dere09g1924 291 ProSiteProfiles Zinc finger RING-type profile. 58 100 IPR001841 -
Dere09g1924 291 CDD RING-H2 58 100 - -
Dere09g1924 291 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 38 108 IPR013083 -
Dere09g1924 291 SUPERFAMILY RING/U-box 49 106 - -
Dere09g1924 291 SMART ring_2 58 99 IPR001841 -
Dere09g1924 291 SMART ring_2 208 249 IPR001841 -
Dere09g1924 291 SUPERFAMILY RING/U-box 195 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1924 Dere-ChrDere09 25265318 25270049 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1924 207 250 C3H Transcription Factor Family AT1G15100 63.636 1.34e-13 65.5