Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1899 ATGGAAAGAAGAGACGATTTTGCTTTCTGTCTTTTGGCTCTCTTCTTCTTCTGCTCTTCAGTATCTGGTTTCCTTTCACCTGAAGGTGTCAACTATGAAGTGCAAGCTCTTATGGGTATTAAAATTTCTTTAAAGGATCCTAATAAAGTCCTTAATAAGTGGGATGAAAATGCTGTGGATCCCTGTAGCTGGGCTTTGGTCACTTGTTCTTCTGATCATTCTGTAATTGTCCTGGAATTTCCAAGCCAAAACTTATCTGGTACTCTTTCGCCAAGCATCGGCAACTTAACAAATCTTCAAATTGCGCTCCTGCAGGATAATAATATAACAGGACCAATTCCCTCCGAGCTTGGGAGGCTGCAAAAGCTTGAAACTCTTGATCTTGCTGATAATTTCTTCACTGGTGAACTTCCTGATAGTCTCTCCCACATGAAGAGTCTTCGTTATCTGAGGCTGAACAATAATAGTCTTACTGGAGCAATACCTTCCTCTTTGGCTAACATGACCCGGCTTGCTTTTCTGGATATATCATATAATAACTTGAGTGGACCTTTACCTACAATAAATGCAAAAACATTCAGTGTTGTGGGAAACCCTCAGATATGTGCCACGGCAACTGAGCAAAACTGCTTCAGAACAACACAGCTTTCTACAAATTTGAATAATTCTCCTAATTCGCCATCCACTGAGGGACCAAAGAATCACAAAGTTGCCTTGGCATTTGCTTCCACCATAAGCTGCATCTGCTTACTGACTCTGGCGTTTGGCTTCCTCCTCTGGTGGAGACAAAGATATAACAAACAAGTTTTCTTCGATGTCAATGAGCAAATGCGTGAAGAGGTCTGCCATGGGAACCTGAGAAGGTTCCATCTGAGAGAGCTGGAGGTTGCTACAAACAAGTTCAGCAGCAAGAACCTGATAGGAAAAGGAGGGTATGGGAATGTGTACAAAGGGTATTTGCCAGAGGGTGGAGTTGTTGCAGTGAAGAGGCTTAGAGATGGGAGTGCCATTAATGGAGGAGAGACTCAGTTTCAGACAGAAGTAGAGATGATCAGCCTGGCTGTGCATCGCAATCTGCTTCGGCTCTATGGGTTCTGCATCACTCCCACTGAGAGGCTCTTGGTTTATCCCTACATGTCCAATGGCAGTGTTGCTTCTCGTCTCAAAGCCAAGCCTGCTCTAGACTGGAGCACAAGGAAGAGGATAGCCTTGGGAGCTGCAAGGGGCTTACTATACCTACATGAGCAGTGTGACCCTAAGATCATTCACAGGGATGTAAAGGCTGCAAATATCTTGCTTGATGATTATTGTGAAGCTGTGGTTGGAGATTTTGGGTTGGCAAAACTGTTGGATCACAAGGATTCACACGTCACTACAGCTGTTAGAGGCACTGTAGGGCACATAGCCCCAGAGTACCTCTCAACAGGCCAGTCCTCTGAGAAAACAGATGTGTTTGGCTTTGGAATCCTTCTTCTTGAACTCATCTCTGGCCAAAGAGCACTTGAATTTGGAAAAGCAGCTAACCAGAAAGGAGCCATACTTGATTGGGTGAGGAAGATCCATCAAGAGAAGAAACTTGATTTGTTAATTGACAAGGATTTGAGAAACAACTATGACAGAATAGAGCTTGAAGAAATCGTTCGAGTGGCTCTCCTGTGCACTCAGTACCTTCCAGGTCATAGACCCAAAATGTCTGAAGTGGTTCGAATGCTTGAAGGAGATGGGCTTGCAGAGAAATGGGAAGCTTCACAGAGGGCTGAATCAACAAGCAGTAGAGCAAATGAACAATCATTTTCAGAACGCTACTCTGATCTCACTGACGACTCTTCATTGCTTAATCAAGCCATGGAGCTTTCTGGACCAAGGTGA 1869 0.4419 MERRDDFAFCLLALFFFCSSVSGFLSPEGVNYEVQALMGIKISLKDPNKVLNKWDENAVDPCSWALVTCSSDHSVIVLEFPSQNLSGTLSPSIGNLTNLQIALLQDNNITGPIPSELGRLQKLETLDLADNFFTGELPDSLSHMKSLRYLRLNNNSLTGAIPSSLANMTRLAFLDISYNNLSGPLPTINAKTFSVVGNPQICATATEQNCFRTTQLSTNLNNSPNSPSTEGPKNHKVALAFASTISCICLLTLAFGFLLWWRQRYNKQVFFDVNEQMREEVCHGNLRRFHLRELEVATNKFSSKNLIGKGGYGNVYKGYLPEGGVVAVKRLRDGSAINGGETQFQTEVEMISLAVHRNLLRLYGFCITPTERLLVYPYMSNGSVASRLKAKPALDWSTRKRIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHKDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELISGQRALEFGKAANQKGAILDWVRKIHQEKKLDLLIDKDLRNNYDRIELEEIVRVALLCTQYLPGHRPKMSEVVRMLEGDGLAEKWEASQRAESTSSRANEQSFSERYSDLTDDSSLLNQAMELSGPR 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1899 622 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 13 582 - -
Dere09g1899 622 Gene3D Ribonuclease Inhibitor 30 212 IPR032675 -
Dere09g1899 622 MobiDBLite consensus disorder prediction 581 622 - -
Dere09g1899 622 Gene3D Transferase(Phosphotransferase) domain 1 379 591 - -
Dere09g1899 622 ProSiteProfiles Protein kinase domain profile. 301 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere09g1899 622 MobiDBLite consensus disorder prediction 583 616 - -
Dere09g1899 622 FunFam Somatic embryogenesis receptor kinase 1 270 378 - -
Dere09g1899 622 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Dere09g1899 622 ProSitePatterns Serine/Threonine protein kinases active-site signature. 421 433 IPR008271 GO:0004672|GO:0006468
Dere09g1899 622 FunFam Putative LRR receptor-like serine/threonine-protein kinase 30 212 - -
Dere09g1899 622 SUPERFAMILY Protein kinase-like (PK-like) 279 572 IPR011009 -
Dere09g1899 622 Gene3D Phosphorylase Kinase; domain 1 270 378 - -
Dere09g1899 622 FunFam Somatic embryogenesis receptor-like kinase 1 379 591 - -
Dere09g1899 622 ProSitePatterns Protein kinases ATP-binding region signature. 307 329 IPR017441 GO:0005524
Dere09g1899 622 SMART serkin_6 301 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere09g1899 622 SUPERFAMILY L domain-like 32 195 - -
Dere09g1899 622 Pfam Leucine rich repeat 122 181 IPR001611 GO:0005515
Dere09g1899 622 Pfam Protein kinase domain 302 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1899 Dere-ChrDere09 25014707 25018672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1899 9 622 Receptor kinase-like Gene Family AT5G16000 73.718 0.0 933
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Dere09g1899 Pkinase 3.5e-43 CL0016