Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1886 ATGGGTGACAAGGAAAACTTTGAGCCTGATAGAAACGAGGATCCTATGAGTTATTCAACTAGTATGCCCTCTGATTGGCGATTTGGGGGTGCCAATCTTGCAAATACATCTGCGGGTTTGGTTCCCATTGGAAATTCGATGAATATTAGCAGAGGAGATCTTATTAGTTCCTCTTCCTGTTCTCCTGCTTCAATGGGGGACTCTTCTTATGGTCCAAACTTTTGGGCCCACGCCAGCAACTCCCAGAACTTGGGATTTTGTGACATTAATGTCCTGAACAATGGTGGTAGCCCGTCAAACACAATTGGGATAAAAAAAGATGGCCTAGACTTCTCAAGAGAAATGGGTTGGAATCCTGCAAATTTTATGTTAAAAGGGGATGCTTTCTTACCAAATGGACCTGGAATGCTACTTCCCCACAGCTTATCTCATCAGTTTCCAACTGATTCTGGTTTTATTCAACGTGCTGCGAGATTCTCAAGCTTCAGTGGAGGGAATTTTGGTGATATGGTAAACTCATGTGGGATTCCTCAATCTGTAATGGGTTTGAATGGTAGGAGTGGGGTTCCTGGAGGACAATCTCAAGATAGAGATCTGAATGTAGTAGGTGAAGCTGCAAGAAATGTGTCTCCTGCGGAGAATCAGGCTGCTAAAGAGAATCAGGCTTCTAAAAGGAACCCGGGTCATAATAATGACAAAAGAAGTGAAAGGCATGTGAAATCTCAAGATGAATCAAAACAAGCTCTTGGTAAGTCTGCTATTGAGTCTGATGTAGCTCAATCTAGTGGTGATGATGGTGCCGGTGGTCAAGATGATTCCCTGATGTTGGAGGGTACATGTGGAGAGCCTTCTACTAAAGGTGTAAACCCAAAGAAAAGGAAAAGAAATGGGCAGGACGCTGAAAATAATAAAGCCAATGGATCTCCTGAACCACTGAGTGAAGCTAAGGACAACTCAGATAGTCGACCGAAGGGAGACCACCTACCAACTTCAACAACCAAGGCCTCCGGGAAGAATGCCAAACAGGGGTCTCAAACTTCTGATCTACCAAAGGAGGAATACATACATGTTCGAGCTCGCCGAGGTCAAGCAACAAATAGCCATAGCCTTGCAGAGAGAGTAAGGAGGGAAAAGATCAGTGAAAGAATGAAGTTTCTTCAAGACCTTGTACCTGGATGCAGCAAGGTCACTGGCAAGGCGGTGATGCTAGATGAAATCATCAACTATGTACAATCTCTTCAGCAACAAGTTGAGTTTTTGTCTATGAAACTTGCAACAGTGAATCCACGGTTAGATTTCAATGTTGAAGGACTTCTTACTAAAGATATTCTTCATCAACGGCCTGGACTGTCATCTGCACTGGGCTTTTCACCAGAATTACCTGTTTCGTTTCCTGCGTTACACCCATCCCAACCAGGACTTGTTCAGCCAAATCTTCCTGGAATTGCAAATTCATCTGACATACTTCGGAGACCCCTTCATCCACCACAGTTGGCACCCTTGACTGGAGGATTCAAAGAGCCTAGTCAGTTACCTGATGTATGGGAGGATGAGCTTCACAATGTAGTACAGATGAGTTTTCCAACAACTGCTTCCCTGAGTAGCCAAGATGCGGATGGTTCTGTACCAGCAGGGCAGATGAAAGTTGAAGCGTAA 1656 0.4438 MGDKENFEPDRNEDPMSYSTSMPSDWRFGGANLANTSAGLVPIGNSMNISRGDLISSSSCSPASMGDSSYGPNFWAHASNSQNLGFCDINVLNNGGSPSNTIGIKKDGLDFSREMGWNPANFMLKGDAFLPNGPGMLLPHSLSHQFPTDSGFIQRAARFSSFSGGNFGDMVNSCGIPQSVMGLNGRSGVPGGQSQDRDLNVVGEAARNVSPAENQAAKENQASKRNPGHNNDKRSERHVKSQDESKQALGKSAIESDVAQSSGDDGAGGQDDSLMLEGTCGEPSTKGVNPKKRKRNGQDAENNKANGSPEPLSEAKDNSDSRPKGDHLPTSTTKASGKNAKQGSQTSDLPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPRLDFNVEGLLTKDILHQRPGLSSALGFSPELPVSFPALHPSQPGLVQPNLPGIANSSDILRRPLHPPQLAPLTGGFKEPSQLPDVWEDELHNVVQMSFPTTASLSSQDADGSVPAGQMKVEA 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1886 551 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 361 432 IPR036638 GO:0046983
Dere09g1886 551 FunFam Basic helix-loop-helix transcription factor 360 432 - -
Dere09g1886 551 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 363 413 IPR011598 GO:0046983
Dere09g1886 551 MobiDBLite consensus disorder prediction 325 349 - -
Dere09g1886 551 MobiDBLite consensus disorder prediction 1 21 - -
Dere09g1886 551 Pfam Helix-loop-helix DNA-binding domain 366 414 IPR011598 GO:0046983
Dere09g1886 551 MobiDBLite consensus disorder prediction 208 352 - -
Dere09g1886 551 CDD bHLH_AtBPE_like 353 438 - -
Dere09g1886 551 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 226 463 IPR024097 GO:0006355
Dere09g1886 551 MobiDBLite consensus disorder prediction 531 551 - -
Dere09g1886 551 Gene3D - 360 433 IPR036638 GO:0046983
Dere09g1886 551 SMART finulus 369 419 IPR011598 GO:0046983
Dere09g1886 551 MobiDBLite consensus disorder prediction 225 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1886 Dere-ChrDere09 24824006 24826860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1886 53 527 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 45.851 2.45e-106 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere09g1886 HLH 7.1e-06 No_clan