Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1874 ATGGGTGATCATACCAGTCCGAGAAGAAGCTGGCTTTCATCCATTTCAAGATTGTCTAAGCTCTGCTTCTATGGTGGAGATGTGAAGACAACCAGAGCCAGTAAGGCACCTAGTGGCCCTGAGGCTGCCATTGTTGCTGCCTCAAAGCATTTCTCTTCTGCTCACAAAGTGAAGAAGAAAAGCTTTTCTCTTAGGTCCATGATTAAATTTTTCTCAGTCAAATGCTTCGTCCGAGACGAGAAGACCAACAAAGCTACAGCGCCTGGTAGTCCGACGAAGGCCACCATGGTTGCTGCCATGAAGCATTTCTCTACGCCTCATAGAGTAAGGACACCTTTTGGTGGTGTTGGCCACCAGCGAACAACAAGAACCTTCTTGAATTCCAAATCAATCCATCACTTAATCGAGATTCGTACGCAAAATTCAAGCAAGGAAACTCCGTGCCCTGTTGTACAGAGAATAATGAGAGCAGGGAAAGGGAATCAAGATGACGATGAGTACGAGGAAGAAGAGTTCGGTTCTAAGAAAGAAGGTCCTTCGTCCCTGCCTAACAGCAATAACACCAACAAAGCTATTGATAAGGCAAGTGCTATAAGATCAAAACATTCGGTAACTGAGCAGCGAAGAAGGAGCAAGATAAATGAGAGATTCCAGATATTAAGGGATCTCATACCTCATAGTGATCAAAAGAGGGACACAGCATCATTCCTATTAGAGGTGATTGAGTATGTCCAGTACTTACAGGAGAAGGTACAAAAATATGAAGGTTCGTATCAGGGTTGGGGTCAGGAGCCCACAAAGTTGATGCCTTGGAGAAACAGTCACTGGCGTGTTCAAAGCTTTGGGCAACCTCAAGCTGTAAAGAATGGTGCTGGTCCTGTATCACCTTTTCCTGGGAAGTTTGATGAAAGCAACATTAGTGTCTCTCCAACTGTGCTTAGTGGCTCCCAGAATATGATAGATCCAGATCAGAGCAGGGATATTGTCAGCAAAACAGCAGAGAGGCAATCTGACTTAGAAAGCAAGGGGATACCTCTGCCCATGCCTATGCATGCAAGCATGTCTGTTCCCATCAGAAGTGATGGAACACTTGCCCATCCTCTTCAGGGGCCTGTTTCTGATGGACAGTCAATTGAATGTCCAGCCACTAGTGAACCACAGAACCAACAGGACGAGCTGACAATTGAAGGAGGAACAATTAACATCTCAAGCGTATACTCCCAAGGGCTGTTAAATAATCTGACTCAAGCGCTACAGAGTGCTGGTTTAGATCTCTCACAGGCTAGCATTTCAGTTCAAATTAATCTTGGTAAGCGGGCAAACAATGTACCAGGCTGTGGGACATCCACTCCTAAGAATCATGATAGTACTCCTTCTAGCAATCAAGCAATTGCACATTTTAGAGATGCAGGCAATGGAGAAGACACAGATCAAGCTCAGAAACGGCTGAAAACGTAG 1458 0.4513 MGDHTSPRRSWLSSISRLSKLCFYGGDVKTTRASKAPSGPEAAIVAASKHFSSAHKVKKKSFSLRSMIKFFSVKCFVRDEKTNKATAPGSPTKATMVAAMKHFSTPHRVRTPFGGVGHQRTTRTFLNSKSIHHLIEIRTQNSSKETPCPVVQRIMRAGKGNQDDDEYEEEEFGSKKEGPSSLPNSNNTNKAIDKASAIRSKHSVTEQRRRSKINERFQILRDLIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYQGWGQEPTKLMPWRNSHWRVQSFGQPQAVKNGAGPVSPFPGKFDESNISVSPTVLSGSQNMIDPDQSRDIVSKTAERQSDLESKGIPLPMPMHASMSVPIRSDGTLAHPLQGPVSDGQSIECPATSEPQNQQDELTIEGGTINISSVYSQGLLNNLTQALQSAGLDLSQASISVQINLGKRANNVPGCGTSTPKNHDSTPSSNQAIAHFRDAGNGEDTDQAQKRLKT 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1874 485 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 195 269 IPR036638 GO:0046983
Dere09g1874 485 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 81 485 IPR044295 GO:0003700|GO:0006351|GO:0046983
Dere09g1874 485 MobiDBLite consensus disorder prediction 441 466 - -
Dere09g1874 485 MobiDBLite consensus disorder prediction 178 194 - -
Dere09g1874 485 MobiDBLite consensus disorder prediction 470 485 - -
Dere09g1874 485 FunFam BHLH domain class transcription factor 195 267 - -
Dere09g1874 485 MobiDBLite consensus disorder prediction 441 485 - -
Dere09g1874 485 MobiDBLite consensus disorder prediction 195 210 - -
Dere09g1874 485 MobiDBLite consensus disorder prediction 157 210 - -
Dere09g1874 485 Pfam Helix-loop-helix DNA-binding domain 199 248 IPR011598 GO:0046983
Dere09g1874 485 Gene3D - 195 267 IPR036638 GO:0046983
Dere09g1874 485 SMART finulus 203 253 IPR011598 GO:0046983
Dere09g1874 485 CDD bHLH_AtBIM_like 196 272 - -
Dere09g1874 485 MobiDBLite consensus disorder prediction 312 349 - -
Dere09g1874 485 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 197 247 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1874 Dere-ChrDere09 24701833 24715929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1874 155 441 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 60.000 1.39e-113 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere09g1874 HLH 3.1e-13 No_clan