Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1858 ATGGAGAACATACTGGAACGCTATGAAAGATATGCCTATGCTGAGAGGCAGCTTGTAGGAAATGTTTCTTCTGAGACACAGGGAAACTGGACCATTGAGCACTATATGGGAGAAGATCTGGGTTCATTGAGCCTGAAAGAGCTTCAGAGTTTAGAGCAACAGTTAGAAGCAGCTATCAAGCACGTCCGTACACGCAAAAACCAGCTCATGTACGAGTCTATTTCTGAGCTTCAGAAAAAGGAGAAAGTGATACAGGAGCAGAATGCCATACTGGCAAAGAAGATAAAGGAGAAAGAAAAAGCTGCAGCACAGGCACAACAGGCACAATGGGAGCAGCCTAATCAATCTTTCTTACTTCCACATCCACTTCCCACTTTAAACAATGTGGGGTCTTTGCCGCCGCCGTCGCCCATCAACTGTGTTGGCTCTGCCGCCGCTCACGGGAGGGTGCTGCCATTAACAGTGCCGTATCGAGTTAAGCAATCAAGGAAGGATTGCCTTGCAAGGGTGGTCAAATTTAGGGAAGAAGTTGGGAAACTTAAGAACCCAGAAGTCCCTCTTTCTGCTGGTTGTCTGTGCAGTGGGTTTCTGCAACTCTTCGTTTTTTCCATGGAGGTCGATCCACCAGAAGCCTTGTCTCAACACCGAAAGAGAAAGCCCAAGAGTAAACGAACTCGGGAAGACCCAGAACTTGAACGGCTGAACTCACTGTCGTGGAACCCCTCTCTTCCTGAAAATGAGGATCCTTTTTCTTTGCTTGTGGGCTCAAATGAACTTGAAGGAGGTTTCCTTTCATTGGAAGAGATTGATGAAACTGAGTATGGTTTGCAAATTCCTGATCCTGAAGAAGACAGGAGGAAGAAGAAGTCTAAGCATAAAACAAATTTGAAGAAACAGAAGCAGGATGAAGTAGAGGGTGCTTGCAATGAGGAGGCTGGGGCGAAGTTTGAGGAAGAAAAGGTTGAGGGTGTGATGACTAAGAAGAAGGAAAAGAAGAAGAAGAAGAAAAAGGAAGCTGCTGACCTAGTTACCAGCGTGAAGGATGATAATGAGGAAGATGACATTGATGAAATGGAATTTTACGCATGGAATGAGTTGAGACTTCATCCTCTGCTCATGAAAGCGATATACAAACTTGGATTCAAGGAACCCATGCCTATACAGAAAGCTTGTATTCCAGCTGCTGCTCATCAAGGGAAGGATATTGTGGGGGCTTCAGAGACAGGATCTGGGAAAACGCTTGCATTTGGTTTGCCCATTTTGCAACGCCTTTTAGAGGAGAGAGAGAAGGCTGCAAAGATGGTTGAACAAAAGGGGGAGGAACCTGAAAAGTATGCTCCTACTGGCCTTCTAAGGGCTCTTATAATTGCTCCAACTAGGGAACTTGCACTTCAGGTCACTGATCATCTGAAAGCAGTAGCCAAGTATATCAATGTTAGGGTGACCCCTATAGTTGGGGGCATTTTAACAGAAAAGCAGGAGAGACTCTTAAAAGCAAGGCCTGAGATTATTGTTGGAACTCCAGGGAGGTTATGGGAACTTATGTCAGCTGGAGAAAAGCATCTAGTTGAGCTACATTCCTTGTCATTCTTTGTACTGGATGAGGCTGATCGAATGATACAAAATGGTCATTTTAAAGAGTTGCAATCAATAATTGACATGCTTCCCATGGCCAATATGTCTGGTGGCGATGATTCTCAATCTGCACAAAATTGTATTACAGTTTCCAGCTACCAAAAAAAGAAAAGACAAACTCTAGTGTTTTCAGCAACTGTTGCACTATCTGCCGATTTTCGCAAGAAGTTGAAGCGTGCTTCAACAAAACAAAAGCAATCAGTGTTAGATGGATTTAATTCCATTGAAACTCTCTCTGAACGTGCAGGAATGAGAGCCAATGCTGCAGTCATTGATCTCACTAATCCATCAATATTAGCAGCCAAGCTTGAAGAATCATTTATTGAATGCAAGGAAGAAGATAAAGATGCTTATTTGTATTATATTTTAACTGTCCATGGACAAGGCCGTACAATAGTATTCTGTACATCAATTGCAGCTTTGCGCCATATCTCTTCTCTACTCCGCATTCTTGGGATCAATGCTTGGACTCTTCACGCCCAAATGCAGCAACGAGCACGTTTAAAGGCCATTGATCGCTTTCGTGAATCTGAAAATGGCATACTTGTTGCTACTGATGTTGCAGCAAGGGGTCTTGATATTCCTGGTATTAGAACAGTTGTCCACTATCAGCTTCCACATTCAGCAGATGTTTATGTTCATAGAAGTGGAAGAACAGCTAGGGCTTCTGCTGAAGGGTGCAGCATTGCTTTAATCTCACCAAAAGATACGTCAAAGTTTGCTTCGTTGTGCAAGTCCTTTTCTAAGGACACTTTTCAGCGATTTCCTTTAGAGAATTCATACATGCCAGAAGTTCTAAAGCGATTGTCTATTGCACGTCAAATAGACAAAATAATACGAAAGGATTCACAGGAAAAAGCTCAGAAAAGCTGGTTTGAGCGGAATGCTGAATCAGTGGAATTAGTTATTGAAAATTATGACAGTGAGGAGGAAAGAGTGAACAAATATAAGCAAACGAAAGCCAGCTCTACTCAGTTGAAGAAATTGCAGCAGAAGCTCAATGTGCTGCTTTCACAGCCCTTACAATCAAAAACATTTTCACATCGATATCTAGCAGGGGCTGGGGTCACACCTCTCATGCAGGAACAGTTCCAACAATTAGCCAGGCAAAGACAAGGTGGAAGTTCAGGAATATCCAGTAAAGGAAAATTGGTTGTAATTGGTCAAGATTGTGTTGAAGCACTTCAGGCCTTGCGGAATGCTGGGGAAGAGGTGCGCATGGATGTCAAGGATATGGCAAGAAAAAGGATAAATATGGAGAACTTGAAAAGAAAGAGAAAAGAGGAGAAAAAACGTTTGCGTGACCAGCGAAGAAAGCAGAAAAGAAAGTTATCAAAGGAGAATGAATAG 2985 0.4295 MENILERYERYAYAERQLVGNVSSETQGNWTIEHYMGEDLGSLSLKELQSLEQQLEAAIKHVRTRKNQLMYESISELQKKEKVIQEQNAILAKKIKEKEKAAAQAQQAQWEQPNQSFLLPHPLPTLNNVGSLPPPSPINCVGSAAAHGRVLPLTVPYRVKQSRKDCLARVVKFREEVGKLKNPEVPLSAGCLCSGFLQLFVFSMEVDPPEALSQHRKRKPKSKRTREDPELERLNSLSWNPSLPENEDPFSLLVGSNELEGGFLSLEEIDETEYGLQIPDPEEDRRKKKSKHKTNLKKQKQDEVEGACNEEAGAKFEEEKVEGVMTKKKEKKKKKKKEAADLVTSVKDDNEEDDIDEMEFYAWNELRLHPLLMKAIYKLGFKEPMPIQKACIPAAAHQGKDIVGASETGSGKTLAFGLPILQRLLEEREKAAKMVEQKGEEPEKYAPTGLLRALIIAPTRELALQVTDHLKAVAKYINVRVTPIVGGILTEKQERLLKARPEIIVGTPGRLWELMSAGEKHLVELHSLSFFVLDEADRMIQNGHFKELQSIIDMLPMANMSGGDDSQSAQNCITVSSYQKKKRQTLVFSATVALSADFRKKLKRASTKQKQSVLDGFNSIETLSERAGMRANAAVIDLTNPSILAAKLEESFIECKEEDKDAYLYYILTVHGQGRTIVFCTSIAALRHISSLLRILGINAWTLHAQMQQRARLKAIDRFRESENGILVATDVAARGLDIPGIRTVVHYQLPHSADVYVHRSGRTARASAEGCSIALISPKDTSKFASLCKSFSKDTFQRFPLENSYMPEVLKRLSIARQIDKIIRKDSQEKAQKSWFERNAESVELVIENYDSEEERVNKYKQTKASSTQLKKLQQKLNVLLSQPLQSKTFSHRYLAGAGVTPLMQEQFQQLARQRQGGSSGISSKGKLVVIGQDCVEALQALRNAGEEVRMDVKDMARKRINMENLKRKRKEEKKRLRDQRRKQKRKLSKENE 994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1858 994 Pfam K-box region 32 95 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere09g1858 994 CDD SF2_C_DEAD 648 777 - -
Dere09g1858 994 Coils Coil 844 864 - -
Dere09g1858 994 Pfam DEAD/DEAH box helicase 386 593 IPR011545 GO:0003676|GO:0005524
Dere09g1858 994 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 647 808 IPR001650 -
Dere09g1858 994 PANTHER RNA HELICASE 328 934 - -
Dere09g1858 994 ProSiteProfiles K-box domain profile. 1 101 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere09g1858 994 Coils Coil 88 111 - -
Dere09g1858 994 Gene3D - 644 890 IPR027417 -
Dere09g1858 994 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 452 784 IPR027417 -
Dere09g1858 994 MobiDBLite consensus disorder prediction 972 986 - -
Dere09g1858 994 Coils Coil 421 441 - -
Dere09g1858 994 Pfam Helicase conserved C-terminal domain 659 767 IPR001650 -
Dere09g1858 994 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 322 556 IPR027417 -
Dere09g1858 994 MobiDBLite consensus disorder prediction 272 306 - -
Dere09g1858 994 SMART ultradead3 380 620 IPR014001 -
Dere09g1858 994 MobiDBLite consensus disorder prediction 961 994 - -
Dere09g1858 994 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 532 540 IPR000629 -
Dere09g1858 994 SMART helicmild6 687 768 IPR001650 -
Dere09g1858 994 Coils Coil 45 68 - -
Dere09g1858 994 Gene3D - 320 612 IPR027417 -
Dere09g1858 994 CDD DEADc_DDX24 372 637 - -
Dere09g1858 994 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 361 389 IPR014014 GO:0003724
Dere09g1858 994 MobiDBLite consensus disorder prediction 210 242 - -
Dere09g1858 994 Coils Coil 957 992 - -
Dere09g1858 994 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 393 610 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1858 Dere-ChrDere09 24368776 24388903 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1858 362 808 Eukaryotic Initiation Factors Gene Family AT5G11200 27.331 1.08e-39 152