Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1857 ATGGGGAGGGGTAGGGTTCAGCTGAAGAGGATAGAGAACAAGATCAACAGGCAGGTGACATTCTCTAAGAGGAGAATTGGTTTGGTGAAGAAGGCACATGAGATCTCTGTGCTTTGTGATGCTGAGGTTGCTTTGATTGTCTTCAATAACAAAGGAAAGCTCTTCGAATATGCCACTGATTCTTGGTATATATGTTTTTGTGGCATATTGCATTTAAAAGATGTACAGAACATGGGAGCAAGAGCTACTGCTGCAACTGCTTTTCTTTTTGTTGATAGTGTTAGTGTTGGGGAGTTGGAGGTTTTCGCTGGTTAA 315 0.419 MGRGRVQLKRIENKINRQVTFSKRRIGLVKKAHEISVLCDAEVALIVFNNKGKLFEYATDSWYICFCGILHLKDVQNMGARATAATAFLFVDSVSVGELEVFAG 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1857 104 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dere09g1857 104 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dere09g1857 104 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dere09g1857 104 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Dere09g1857 104 SUPERFAMILY SRF-like 2 62 IPR036879 GO:0003677|GO:0046983
Dere09g1857 104 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Dere09g1857 104 FunFam MADS-box transcription factor MADS-MC 13 77 - -
Dere09g1857 104 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Dere09g1857 104 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Dere09g1857 104 CDD MADS_MEF2_like 2 61 IPR033896 GO:0000977|GO:0045944
Dere09g1857 104 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 61 - -
Dere09g1857 104 Gene3D - 13 65 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1857 Dere-ChrDere09 24365069 24367940 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1857 1 70 MADS-box Gene Family AT1G26310 75.714 5.78e-32 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Dere09g1857 SRF-TF 7.6e-25 No_clan