Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1856 ATGGGTAGAGGAAGAGTGGAGCTCAAGAGGATCGAGAACAAGATTAATCGGCAAGTGACATTTGCCAAAAGGAGGAATGGGCTTCTCAAGAAGGCTTACGAGCTCTCCGTTCTCTGCGATGCTGAGGTTGCCCTCATCATCTTCTCCAATCGAGGCAAGCTCTACGAGTTCTGCAGCAACTCTAGCATGGCCAAGACAATTGAGCGGTACCAAAGATGCAGCTATGGAGCCATGGAAGCAGACCAACCTGCAGTGGAGACGCAGAGGTGCTACCAAGAGTATCTCAAGCTGAAATCAAAAGTTGAGGCACTACAGCGTACACAGAGAAATCTGCTTGGGGAAGAATTGGAACACTTGGGCATAAAGGAGCTTGAGCAGCTTGAACGTCAGCTGGACTCTTCGTTAAAGCAAATCAGGTCAAACAAGACACAACATATGCTTGATCAAATCTCTGATTTGCAAAGAAAGGAAGAGATGCTTCTGGAAACTAATAGAGCCTTGAGGAGCAAGATGGAAGAAATAAACATAACTCTGCAACCATCATGGGATGTAAGGGAAGAAAATGATCCATACAGCCGCCACCCTCCACAATCCGAGGGATTCTTTGGGATTGCACAGTGCAATCACACATTGCAGATTGGCTATGGTTCAGCAGAAACAAATGAAGCTGCAGCAGCGGTGGGAACCTCAGCCCAAAATGCTAGTGAATTCATGCCAGGATGGATGGCATGA 732 0.4713 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSNSSMAKTIERYQRCSYGAMEADQPAVETQRCYQEYLKLKSKVEALQRTQRNLLGEELEHLGIKELEQLERQLDSSLKQIRSNKTQHMLDQISDLQRKEEMLLETNRALRSKMEEINITLQPSWDVREENDPYSRHPPQSEGFFGIAQCNHTLQIGYGSAETNEAAAAVGTSAQNASEFMPGWMA 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1856 243 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Dere09g1856 243 Coils Coil 150 173 - -
Dere09g1856 243 Pfam K-box region 86 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere09g1856 243 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Dere09g1856 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dere09g1856 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dere09g1856 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dere09g1856 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 175 - -
Dere09g1856 243 FunFam MADS-box transcription factor 1 13 88 - -
Dere09g1856 243 Coils Coil 121 144 - -
Dere09g1856 243 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere09g1856 243 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Dere09g1856 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Dere09g1856 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Dere09g1856 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Dere09g1856 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1856 Dere-ChrDere09 24344086 24352640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1856 1 242 MADS-box Gene Family AT5G15800 59.770 1.61e-97 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dere09g1856 K-box 2.4e-28 No_clan