Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1853 ATGGAATCTTGGAGTTACCCAGCAGAAGAGAGAGGCTATATGATTTCTGATGGGATGGATTTTTCACTTGAAGCTTTTATGAGAGGCAAAAAAGCTTTGGTTGAATGGGACAACAAAGCCAAAGCCTCCTGTAACTTTGAGAAGGATGAATTTAGTTCAGATGGAGGGGGATTTAAAAGCATGGAATTTGTTGACCTGGGGTTTCATGGCTTGTTTCAACATGACATAGATAGAAACTATAGTAAAAGAGTGAATTCCTCTAACCGTGTTATTGCGACAGATTCATCTTTGGTGGAAGAAGAATCTCAGTCGAAGGATTCTTGTTCTCTAGTTGAATCTAAAAGTCACAATTCATCACTGATTGACTTGAAGCTAGGGAGATTAGCAGATTGTAAAGATGCAATTAGCGATAAATTTGCAAAGAGAGCTCGCATTTCCAGCTCACCTACTCAGACACCTGTATGTCAAGTTTATGGTTGTAACATGGATCTTAGCTCCTCAAAAGAGTACCACAAGAGGCATAAAGTTTGTGATGCTCACTCCAAGACAGCCAAAGTTATTGTTAATGGCATTGAGCAGAGGTTTTGTCAACAATGTAGCAGGTTCCACTTGCTAGCTGAGTTTGATGAAGGTAAGCGCAGTTGTCGTAGACGCCTGGCAGGACACAATGAACGCAGAAGGAAGCCTCAGTTTGATTACATGTCTGGTAAACCATACAAGATGCTTCAGTTACATCAAGGCACCAAATATCTGGAGGCTTCATTACAGAAGAGAACCCAGTTTACCTTTCAAGACATGATTGGAAGTAGCATTTTTCACTCCGGAAAGTATGAACAAACCAATCTCAGTGAACATATATTACATGGTCAGGAGAAGTTATCAAGGGACTCAAACACTGCCTGTGCTCTCTCTCTTCTGTCAGTTCAGTCACAGGACCTGTCATGCCACTTGGCAGGAAACCAGGTAGCTAATTCCCTTGTTTTAAATGGCGTCTGTGCGAACCACAGCGATGAACAAGTTTCCAAAGTACCTTTAGGGGTAAACTCAGTGGACAACTATGCACAAAATGAGTCCTCTTCACGTGGGGTGAACTCAATGGAAGTTATCAAGAATGGATCCATAATGCTTTCTGATGTTGATCGTGCTCCTCATTTTCAAGTTTGCAGAGACAATATGTACCAAACATCAGACTTGATAAATGTCAAACACCTTCTTTCCACTGAAGATGGACCTACTGTTGATCTTTTCCAGTTGTCTTCACATCTTCAAAGGGTTGAGCATCAAAGAAATTCATTTCTTCAGTAA 1305 0.41 MESWSYPAEERGYMISDGMDFSLEAFMRGKKALVEWDNKAKASCNFEKDEFSSDGGGFKSMEFVDLGFHGLFQHDIDRNYSKRVNSSNRVIATDSSLVEEESQSKDSCSLVESKSHNSSLIDLKLGRLADCKDAISDKFAKRARISSSPTQTPVCQVYGCNMDLSSSKEYHKRHKVCDAHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDEGKRSCRRRLAGHNERRRKPQFDYMSGKPYKMLQLHQGTKYLEASLQKRTQFTFQDMIGSSIFHSGKYEQTNLSEHILHGQEKLSRDSNTACALSLLSVQSQDLSCHLAGNQVANSLVLNGVCANHSDEQVSKVPLGVNSVDNYAQNESSSRGVNSMEVIKNGSIMLSDVDRAPHFQVCRDNMYQTSDLINVKHLLSTEDGPTVDLFQLSSHLQRVEHQRNSFLQ 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1853 434 ProSiteProfiles Zinc finger SBP-type profile. 152 229 IPR004333 GO:0003677
Dere09g1853 434 SUPERFAMILY SBT domain 153 234 IPR036893 GO:0003677|GO:0005634
Dere09g1853 434 Gene3D - 146 216 IPR036893 GO:0003677|GO:0005634
Dere09g1853 434 FunFam Squamosa promoter-binding-like protein 14 146 216 - -
Dere09g1853 434 Pfam SBP domain 155 228 IPR004333 GO:0003677
Dere09g1853 434 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 139 339 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1853 Dere-ChrDere09 24279384 24283623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1853 77 430 SBP-box Gene Family AT1G69170 35.135 4.10e-53 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Dere09g1853 SBP 9.9e-32 No_clan