Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1849 ATGAACCTGGAAGAGAAAGTCTCCATGGACTTGGTTCAACCCTCTGAACACTTCTGCTATGTCCGTTGCAACTTCTGCAACACTGTGCTTGCGGTTGGGGTCCCATGCAAGAGGCTGCTGGACACAGTGACAGTGAAGTGTGGCCATTGCAGCAACCTATCCTTTCTGAGCACTAGACCACCTCCATCTCATCACAATCACAATGAATCCGATAATAGTAATAATATAGATCACACACTCAGCCTTCAGGGATTTTATACTGATTACAAAAAGGGACAAGCATCATCTTCATCCTCCTCTTCCTCGTTAACCACGTCCGGTGATCCAGTGTCCCCCAAAGCAGCACCTTTTGTTGTGAAACCACCTGAGAAGAAACACCGTCTTCCTTCGGCCTACAATCGTTTCATGAAAGAGGAGATACAACGCATCAAAGCGGCCAATCCTGAGATTCCTCATCGTGATGCTTTCAGCGCTGCTGCCAAAAATTGGGCTAGGTACATTCCAAATTCGCCAACCAGTTCACTTTCTGGAAGTAAGAGTAAGGAATGA 549 0.4663 MNLEEKVSMDLVQPSEHFCYVRCNFCNTVLAVGVPCKRLLDTVTVKCGHCSNLSFLSTRPPPSHHNHNESDNSNNIDHTLSLQGFYTDYKKGQASSSSSSSSLTTSGDPVSPKAAPFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHRDAFSAAAKNWARYIPNSPTSSLSGSKSKE 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1849 182 CDD HMG-box_SF 127 163 - -
Dere09g1849 182 MobiDBLite consensus disorder prediction 90 124 - -
Dere09g1849 182 FunFam protein CRABS CLAW isoform X3 118 178 - -
Dere09g1849 182 Pfam YABBY protein 14 166 IPR006780 GO:0007275
Dere09g1849 182 PANTHER PROTEIN YABBY 6-RELATED 13 175 IPR006780 GO:0007275
Dere09g1849 182 Gene3D High mobility group box domain 113 169 IPR036910 -
Dere09g1849 182 SUPERFAMILY HMG-box 110 164 IPR036910 -
Dere09g1849 182 MobiDBLite consensus disorder prediction 58 77 - -
Dere09g1849 182 MobiDBLite consensus disorder prediction 90 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1849 Dere-ChrDere09 24236588 24238176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1849 1 178 C2C2-YABBY Transcription Factor Family AT1G69180 62.637 3.45e-68 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Dere09g1849 YABBY 1.6e-57 CL0114