Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1844 ATGGCGATGCAAGGTGTGCAGAAGAACACACTGTACGTGGGTGGGCTAGCGGAGGAGGTGAACGAGGCCATCCTTCACGCTGCGTTCATACCTTTCGGGGACATCAAGGACGTCAAGACGCCGCTTGACCAGGCTACCCAGAAGCACCGTTCTTTCGGCTTCGTCACCTTCTTGGAGAGGGAGGATGCTGCCGCCGCCATGGACAACATGGACGGCGCTGAGCTTTACGGTCGTGTACTCACCGTCAACTATGCCCTTCCTGAGCGCATTAAGGGTGGTGAACAGGGTTGGGCTGCCCAGCCAATTTGGGCGGATGCGGATACTTGGTTTGAGCGGCAGCAGCAAGAAGAGGAAATGCGCCGAATTGAGGCAGAGAATCGAGCTGCAATGCAGGCTGCTGAAGACATACGTAGAAAACAACTAGCCCAAGAGCAAGAAGGAGAAAAAGAAGAGGAAATTGAGATCAAGGATGATCCCATGGCAAAGGCTGGAGCAGAGTTTCTGAAACAAAATGACTAG 519 0.5376 MAMQGVQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEREDAAAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMRRIEAENRAAMQAAEDIRRKQLAQEQEGEKEEEIEIKDDPMAKAGAEFLKQND 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1844 172 FunFam Peptidyl-prolyl cis-trans isomerase 1 154 - -
Dere09g1844 172 CDD RRM_PPIE 11 85 IPR034168 GO:0003723
Dere09g1844 172 SUPERFAMILY RNA-binding domain, RBD 6 96 IPR035979 GO:0003676
Dere09g1844 172 Gene3D - 2 149 IPR012677 -
Dere09g1844 172 SMART rrm1_1 10 83 IPR000504 GO:0003723
Dere09g1844 172 Coils Coil 112 139 - -
Dere09g1844 172 MobiDBLite consensus disorder prediction 137 172 - -
Dere09g1844 172 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 80 IPR000504 GO:0003723
Dere09g1844 172 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 9 87 IPR000504 GO:0003723
Dere09g1844 172 PANTHER ATPASE E1 3 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1844 Dere-ChrDere09 24186237 24189069 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1844 9 87 Eukaryotic Initiation Factors Gene Family AT3G11400 37.975 3.11e-11 58.9