Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1834 ATGGAAAGCCACAGTTGCAGTATCAGCTGCCCGTGGAGAGCTGAAGAAGCCATTGGTGGAAACGCGGAAGCTCTTCAAGCTCTCAGAGAAATCATCATATTTCCACTTCAGTACTCTCGCCAAGCTCACAAGCTCGGTCTTAAATGGCCGCGAGGGTTGCTACTATACGGTCCTCCAGGCACCGGAAAGACAAGTCTGGTACGAGCAGTTGTTCGGGAATGTGGAGCACATTTGACACTTATCAGTCCTCATTCTGTCCATAGAGCACATGCCGGGGAAAGTGAGAGACTTCTCCGAGAGGCCTTTTCAGAGGCTTCATCTCATTCAACTTTGGGCAAGCCATCAGTTATCTTCATAGATGAAATAGATGCACTCTGTCCCCGGCGTAATTCCAGAAGGGAACAAGATGTCCGAGTTGCTTCCCAGCTCTTTACACTGATGGACTCAAATAAACCATCCTCATCTATGCCAGGAGTTGTTGTGGTTGCATCAACTAACAGAGTGGATGCAATCGACCCTGCCCTTAGAAGGTCTGGACGTTTTGATGCTGAAATTGAAGTTACTGTACCCAATGAAGAGGAGCGCTTTCAAATTCTCAAGCTTTACACAAAGAAGATTCCCTTAGATCCCAGTGTTGACTTAAAAATGATTGCTGCATCTTGCAATGGATATGTTGGGGCTGATTTGGAGGCTTTGTGTCGTGAAGCTACCATGTTTGCAGTTAAAAGGTCCTCAAATGCAAACGGAAATGCTAGTAATTTCAGCTTAATGATGGAAGATTGGAAGGATGCAAGATCTATTGTTGGTCCAAGCATAACAAGAGGTGTTACAGTGGAAATTCCTAAAGTGACTTGGGAAGATATTGGAGGATTAAAAGAATTAAAGAAAAAGCTCCAGCAAGCTGTTGAATGGCCTATCAAGCATTCTGACGCATTTTCAAGATTGGGCATTTCCCCTGTACGTGGGATTCTTCTGCATGGGCCTCCAGGATGTTCCAAAACAACCCTTGCCAAAGCTGCCGCACATGCTGCCCAAGCTTCTTTCTTTTCCTTGAGTGGTGCAGAATTGTATTCAATGTATGTTGGAGAGGGGGAAGCTTTGCTCCGTCACACATTTCAAAGGGCACGCCTTGCAGCACCCAGCATAATATTTTTTGATGAGGCTGATGTGGTAGCTGCCAAACGGGGTGATACTTCAAGCAATAGTGTTACCGTTGGAGAGAGGCTTTTATCTACTCTTCTGACTGAGATGGATGGCTTAGAAGAAGCTAAAGGGATTCTTGTCCTGGCAGCTACAAACCGCCCTTATGCAATAGATGCTGCACTTATGCGTCCTGGACGTTTTGATTTGGTGCTGTATGTGCCACCACCTGACTTGGAAGCCCGATGTGAAATACTCAGTGTACATACACGTAACATGAAACTAGGGAATGATGTCAATCTCAGAAGACTGGCAGAAGATACTGAGCTCTTCACAGGTGCTGAACTAGAGGGTATATGCAGGGAAGCTGGTATTGTTGCTTTAAGAGAAAACATATCTGCTACTGTTGTGTGTGATCGCCATTTCCAGGTTGTGAGGAATTCTATAAATCCAGCATTAACCAAAGAAGAAATTGATTCTTACTCATCTTTTATGAAGACCTCATCTTCAGCATGTTCTCCGCAATTCAGGTCAAGTTCGAAACTAAATCGGAAGAAAAGAAATTTGTTAGGTTCTATTCCTTTGGTTAAACTTGGTATTGTCAGCTGTATATTGCTTGCTGCTACTAAATACTTTGTGATGCTTGGAGAACAATCTGTATGTGAAGTTGCTTTCACCTGA 1821 0.4421 MESHSCSISCPWRAEEAIGGNAEALQALREIIIFPLQYSRQAHKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTLISPHSVHRAHAGESERLLREAFSEASSHSTLGKPSVIFIDEIDALCPRRNSRREQDVRVASQLFTLMDSNKPSSSMPGVVVVASTNRVDAIDPALRRSGRFDAEIEVTVPNEEERFQILKLYTKKIPLDPSVDLKMIAASCNGYVGADLEALCREATMFAVKRSSNANGNASNFSLMMEDWKDARSIVGPSITRGVTVEIPKVTWEDIGGLKELKKKLQQAVEWPIKHSDAFSRLGISPVRGILLHGPPGCSKTTLAKAAAHAAQASFFSLSGAELYSMYVGEGEALLRHTFQRARLAAPSIIFFDEADVVAAKRGDTSSNSVTVGERLLSTLLTEMDGLEEAKGILVLAATNRPYAIDAALMRPGRFDLVLYVPPPDLEARCEILSVHTRNMKLGNDVNLRRLAEDTELFTGAELEGICREAGIVALRENISATVVCDRHFQVVRNSINPALTKEEIDSYSSFMKTSSSACSPQFRSSSKLNRKKRNLLGSIPLVKLGIVSCILLAATKYFVMLGEQSVCEVAFT 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1834 606 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 281 543 IPR027417 -
Dere09g1834 606 CDD RecA-like_CDC48_r2-like 294 454 - -
Dere09g1834 606 FunFam Cell division control protein 48-B-like protein 273 457 - -
Dere09g1834 606 PANTHER AAA-FAMILY ATPASE 16 548 - -
Dere09g1834 606 SMART AAA_5 49 191 IPR003593 GO:0016887
Dere09g1834 606 SMART AAA_5 319 458 IPR003593 GO:0016887
Dere09g1834 606 CDD RecA-like_CDC48_NLV2_r1-like 17 187 - -
Dere09g1834 606 Gene3D - 273 457 IPR027417 -
Dere09g1834 606 Gene3D - 458 549 - -
Dere09g1834 606 Gene3D - 190 272 - -
Dere09g1834 606 Pfam AAA+ lid domain 478 523 IPR041569 -
Dere09g1834 606 Pfam AAA+ lid domain 211 249 IPR041569 -
Dere09g1834 606 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 243 IPR027417 -
Dere09g1834 606 FunFam Cell division control protein 48 homolog B 10 188 - -
Dere09g1834 606 Pfam ATPase family associated with various cellular activities (AAA) 323 455 IPR003959 GO:0005524|GO:0016887
Dere09g1834 606 Pfam ATPase family associated with various cellular activities (AAA) 53 187 IPR003959 GO:0005524|GO:0016887
Dere09g1834 606 FunFam Cell division control protein 48 homolog B 190 272 - -
Dere09g1834 606 Gene3D - 10 188 IPR027417 -
Dere09g1834 606 ProSitePatterns AAA-protein family signature. 426 444 IPR003960 GO:0005524|GO:0016887
Dere09g1834 606 FunFam spermatogenesis-associated protein 5-like protein 1 457 543 - -
Dere09g1834 606 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 57 76 - -
Dere09g1834 606 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 404 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1834 Dere-ChrDere09 24052220 24065516 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1834 254 544 Calmodulin-binding Proteins AT3G56690 47.079 9.44e-83 278