Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1816 ATGAATCCCCCTCATTGCAATTCTTGCTCTTCTTGTTCCTGTTCTCGTTCTTCATCTTCTTCTCCTTCTTCATCTTCTTCTTCTCCTTCCAGAAATTTGAATAAAGAAGGCAGAGAAATAAAGCCATTTGTACCATGCCCGGGATATCGATTTTGCCCTACTGACGGAGAACTAATCTTTCATTACTTGGCAAAGAAGGTGTTTGGAAAACAACTTCCTATACAGATCATTAGAGAATGCGATGTCTATCGATATGATCCTCATCGTCTTCCACGTTATGATGATGTGATCACTGTCATGAATAGAGATAGAAGAGGTCAGGGCGAGCTGAGTAACGAGAAGGAGGAATTTTACTTCACAACCGAAGAGCCAAAGCCAGAAGGAACACTTACGATTCGTACTACTCCACATGGCTATTGGAAGCAAGTGGGAGACGTTGAGATGGTGAGACACGAAGAACAAATAGTTGGATTCAAGAAAAGTTTCGAGTTTTATTGGGGAGACCCACCAAATGGAGAACTAAGCCAGTGGATTATGAGTGAGCATAGGCTCAATCCAAGAGCATTTTCACATGAACCCCTTCACGATCCTAATGTTCGTGACAAGGTCTACGATATAGGACATGTGATACTGAAGACTGCAGTCTATAGAGTTGGAAAGAATGAACAAACGCCGGTGGATAATCAACATGGCATGACAGATTTGGAAGCAATTGAACATTTGATAAAGAGAGCGTATAGTGTTCCTGTTCCCGGAGAAATATGTACGGACAGGAACCCCTACACCTCGGACCCCCCTCATCTACCACTTAATACGTTCATCTCAAACAGACTAACCAGAAGCATGGGATACTTCTTCATGCTTTCACCTGAAGACTTATCAGAAGGACAGCACCCAGTTCGTCCCACTCCGAATGGCTGCTGGCTGGAGAGGGGAAGAGAGGAGCCAATATTTCACGGGAGAGAGCTGGTGGGGTTCAGAAAAGATTTCCTCTTCTATTGGAGGACTGGTCCAAACCCAATGACTTTCTCCTCAAATCCTCCATTATTTGTAGCACAATGCAAGTGGTACGGAAGCGAGTACAGGATCGATGCAACCGCAAGCTTTTGTGCTGTAGCTCCAAACCATGTTCTTGACAAGGGTGAAGCGAGACATGGGTATCTCTGCACTGCCATTAAACTGTACGGCCTGGTGACTGGAACCGAAAGAGAGAGCAATCGTCCACCGGGTACATCACTGGAGCATCCATGCGTTTGGATCTGGAGTGGGAGCTACGGATCTGGACTGTCGAAAATGCTGTATGGAGCTCGTGAGTAG 1317 0.4541 MNPPHCNSCSSCSCSRSSSSSPSSSSSSPSRNLNKEGREIKPFVPCPGYRFCPTDGELIFHYLAKKVFGKQLPIQIIRECDVYRYDPHRLPRYDDVITVMNRDRRGQGELSNEKEEFYFTTEEPKPEGTLTIRTTPHGYWKQVGDVEMVRHEEQIVGFKKSFEFYWGDPPNGELSQWIMSEHRLNPRAFSHEPLHDPNVRDKVYDIGHVILKTAVYRVGKNEQTPVDNQHGMTDLEAIEHLIKRAYSVPVPGEICTDRNPYTSDPPHLPLNTFISNRLTRSMGYFFMLSPEDLSEGQHPVRPTPNGCWLERGREEPIFHGRELVGFRKDFLFYWRTGPNPMTFSSNPPLFVAQCKWYGSEYRIDATASFCAVAPNHVLDKGEARHGYLCTAIKLYGLVTGTERESNRPPGTSLEHPCVWIWSGSYGSGLSKMLYGARE 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1816 438 ProSiteProfiles NAC domain profile. 224 394 IPR003441 GO:0003677|GO:0006355
Dere09g1816 438 MobiDBLite consensus disorder prediction 1 36 - -
Dere09g1816 438 Pfam No apical meristem (NAM) protein 47 184 IPR003441 GO:0003677|GO:0006355
Dere09g1816 438 Pfam No apical meristem (NAM) protein 233 339 IPR003441 GO:0003677|GO:0006355
Dere09g1816 438 MobiDBLite consensus disorder prediction 1 33 - -
Dere09g1816 438 SUPERFAMILY NAC domain 45 191 IPR036093 GO:0003677|GO:0006355
Dere09g1816 438 ProSiteProfiles NAC domain profile. 45 206 IPR003441 GO:0003677|GO:0006355
Dere09g1816 438 PANTHER NAC TRANSCRIPTION FACTOR 56 233 366 - -
Dere09g1816 438 SUPERFAMILY NAC domain 233 368 IPR036093 GO:0003677|GO:0006355
Dere09g1816 438 Gene3D NAC domain 54 217 IPR036093 GO:0003677|GO:0006355
Dere09g1816 438 Gene3D NAC domain 233 389 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1816 Dere-ChrDere09 23788168 23795067 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1816 47 191 NAC Transcription Factor Family AT4G27410 37.584 2.62e-24 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Dere09g1816 NAM 1.7e-20 No_clan