LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere09g1809	ATGGAGGAGGAGATGAGGAAGTTCGTCTGCAAGTTCTGCAACAAGAGGTACCCTTGTGGGAAGTCTCTGGGTGGTCACATTCGAACCCACATGACTCAACATTCAAGCAATAGTACCATTGCTGATTCAGTCAAGTTCGATAGTAGTGATACTGATGCTGCAAAGAAGAAGAGGAAGAACAGAGATTTGAGCTCAGATTATGGCCTCAGAGAGAATCCCAGAAGAACAACGAGGATAGTTCATACCAACCCCACTTTACTACTTAAGGAGCGGTTTTGTAAAGAATGTGGGAAAGGATTTCCTTCTTTGAAAGCTCTATGTGGTCACATGGCGTGTCACTCTGAAAAAGATAAGCAAAAATTGGTAATGATGGATACTCAATCTGATACTGAGACTTCTGATCCAAAGGGTTCGAAGAGAGTGAGGTACATGACCCTTAATAATCATAATAACCCCACTTCTTCATCTGTGTCAGAAGTTGAACAGGAACAAGAAGAAGAGGTGGCTATGTGTTTGATGTTGTTGTCCACGAATTTGTCTAGTCATAGGGGTCCTTTTGCTTTGGTCACAGAGTCTAATTCTGATAATAATTCTGCTATTTTGGAGGTCAAATTGCCTTCTGTTGATACCAGAATTGGTACCAATAATGGCAAGAATAAGCTTAAGAGCTCTGCATATAATGCTTCTGAGCTTGTAAAGAAGGTGAGAAAGGACAAGATCAAGTTCAAGTTTCCAGATTCTGGGTATTGCAGATATAGTTCCAAAAAGGTGGATTCAAATGTTTCAATTGATGGGGGTTTCAGAAATGATGCTTTTAATCGACCAAAAGTGGAAGATAGATATGGGTTTGAGGATTATGATGTCTCTGAATCGAGGAATATGATGAACAACAGACGCTGCAGAAGCCGGAACACTGAATCCAAGAAACTAGTGTTGGAAAATTTAGACTATGCTAAGTTTGATTCGTTTAAGAGAGTAAAAAATGACTATCTCAGTCGCAATTTGGATGAAATTTCCTGCAAGAAGAGGAAAAATGGCTTTCCTAGCGATGAAATCTACAAGAAAGGCTCCTCCGATTCACAAACATATGCTAGTGAAGAAAAAAGTACAGATAGTACAGACTCTGGTTCTTATCCTTCTTCTTCTTCTTCTTCTCAGAAGCCTGAGAGCAGCAAGAGCAACAAGGCCAAGAAGAAAGTGAAGTCAAGTAAAAGAAAGGATCATGAGTGCCCAATCTGCAACAAAACTTTCAGGTCAGGCCAAGCCTTAGGAGGTCACAAAAGGTCCCATTTCGTCGGAGGCTTTGAAGAGAACAACACTGCACTAATCAAACAAGATTCTCCTTCCCCTTCTCCTGCTGTTCCTTGTCTGATTGACCTTAACCTACCTGCTCCAATTGATGAATAG	1407	0.408	MEEEMRKFVCKFCNKRYPCGKSLGGHIRTHMTQHSSNSTIADSVKFDSSDTDAAKKKRKNRDLSSDYGLRENPRRTTRIVHTNPTLLLKERFCKECGKGFPSLKALCGHMACHSEKDKQKLVMMDTQSDTETSDPKGSKRVRYMTLNNHNNPTSSSVSEVEQEQEEEVAMCLMLLSTNLSSHRGPFALVTESNSDNNSAILEVKLPSVDTRIGTNNGKNKLKSSAYNASELVKKVRKDKIKFKFPDSGYCRYSSKKVDSNVSIDGGFRNDAFNRPKVEDRYGFEDYDVSESRNMMNNRRCRSRNTESKKLVLENLDYAKFDSFKRVKNDYLSRNLDEISCKKRKNGFPSDEIYKKGSSDSQTYASEEKSTDSTDSGSYPSSSSSSQKPESSKSNKAKKKVKSSKRKDHECPICNKTFRSGQALGGHKRSHFVGGFEENNTALIKQDSPSPSPAVPCLIDLNLPAPIDE	468

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere09g1809	468	PANTHER	C2H2-LIKE ZINC FINGER PROTEIN	1	468	-	-
	Dere09g1809	468	ProSitePatterns	Zinc finger C2H2 type domain signature.	10	30	IPR013087	-
	Dere09g1809	468	MobiDBLite	consensus disorder prediction	48	71	-	-
	Dere09g1809	468	ProSiteProfiles	Zinc finger C2H2 type domain profile.	91	118	IPR013087	-
	Dere09g1809	468	SUPERFAMILY	beta-beta-alpha zinc fingers	6	33	IPR036236	-
	Dere09g1809	468	Pfam	C2H2-type zinc finger	8	32	-	-
	Dere09g1809	468	Pfam	C2H2-type zinc finger	408	430	-	-
	Dere09g1809	468	Pfam	C2H2-type zinc finger	93	115	-	-
	Dere09g1809	468	SUPERFAMILY	beta-beta-alpha zinc fingers	92	430	IPR036236	-
	Dere09g1809	468	ProSiteProfiles	Zinc finger C2H2 type domain profile.	408	430	IPR013087	-
	Dere09g1809	468	Gene3D	Classic Zinc Finger	381	438	-	-
	Dere09g1809	468	ProSitePatterns	Zinc finger C2H2 type domain signature.	410	430	IPR013087	-
	Dere09g1809	468	MobiDBLite	consensus disorder prediction	349	407	-	-
	Dere09g1809	468	SMART	c2h2final6	408	430	IPR013087	-
	Dere09g1809	468	SMART	c2h2final6	8	30	IPR013087	-
	Dere09g1809	468	SMART	c2h2final6	91	113	IPR013087	-
	Dere09g1809	468	MobiDBLite	consensus disorder prediction	354	390	-	-
	Dere09g1809	468	ProSiteProfiles	Zinc finger C2H2 type domain profile.	8	35	IPR013087	-
	Dere09g1809	468	ProSitePatterns	Zinc finger C2H2 type domain signature.	93	113	IPR013087	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere09g1809	Dere-ChrDere09	23304974	23306380	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere09g1809	6	468	C2H2 Transcription Factor Family	AT1G26610	37.827	2.85e-76	244

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2H2	Dere09g1809		zf-C2H2_6	4.4e-05	CL0361