Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1779 ATGCTTGCCAACGAAGTTTCTCAAAATTCGCCGCTTCTCGTCGCACTTTCTGTTTCTACCCTTACTACTCTACAGTCTTTCTCTGTCTCTGGTTTGTTTGGAGCTATGTCGGACGAGGAGCACCAGTTCGAGTCCAAAGCTGACGCCGGAGCTTCCAAGACCTTCCCTCAGCAAGCTGGTACCATCCGCAAGAACGGTTACATTGTCATCAAATCCAGGCCTTGCAAGGTTGTGGAAGTTTCAACTTCCAAAACTGGCAAGCATGGGCATGCTAAGTGTCACTTTGTTGGTATCGACATCTTCACTGGGAAAAAGCTTGAAGATATTGTTCCCTCTTCCCACAATTGTGATGTCCCACATGTCAACCGCACCGACTACCAGCTGATTGATATATCTGAGGATGGATTTGTGAGTCTGCTGACTGAGACTGGTGGTACCAAGGATGATCTTAGGCTTCCAACCGATGAAAATCTGCTTACGCAGATCAAGGATGGGTTCGCCGAGGGTAAAGATCTGGTTGTGACTGTTATGTCTGCCATGGGCGAGGAGCAGATTTGTTCTCTGAAGGACATTGGCCCCAAGTAA 585 0.4803 MLANEVSQNSPLLVALSVSTLTTLQSFSVSGLFGAMSDEEHQFESKADAGASKTFPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTETGGTKDDLRLPTDENLLTQIKDGFAEGKDLVVTVMSAMGEEQICSLKDIGPK 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1779 194 Gene3D - 36 120 IPR014722 -
Dere09g1779 194 SMART eIF_5a_2 120 189 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Dere09g1779 194 FunFam Eukaryotic translation initiation factor 5A 36 120 - -
Dere09g1779 194 NCBIfam translation initiation factor IF-5A 53 189 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Dere09g1779 194 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 120 189 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Dere09g1779 194 Gene3D - 121 193 IPR012340 -
Dere09g1779 194 CDD S1_eIF5A 121 191 - -
Dere09g1779 194 SUPERFAMILY Nucleic acid-binding proteins 121 191 IPR012340 -
Dere09g1779 194 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 36 192 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Dere09g1779 194 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 85 92 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Dere09g1779 194 SUPERFAMILY Translation proteins SH3-like domain 50 128 IPR008991 -
Dere09g1779 194 FunFam Eukaryotic translation initiation factor 5A 121 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1779 Dere-ChrDere09 22836212 22842838 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1779 36 194 Eukaryotic Initiation Factors Gene Family AT1G13950 86.164 6.15e-101 286