Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1771 ATGGTGAAAATGAGAAGTCACAGTGAAGAAGAAATGACAAGGCAAGGTGAAGGAAACATTGAATGGGAAGAAGCTGCTACCATGGCAGCTTCTCTTCTTAGAGCTCGAAGATCAGCGAGGAAGCGATTCATTGGGGTTCGCCAGAGGCCTTCAGGGAGATGGGTGGCTGAGATTAAAGACACAATTCAGAACATAAGAGTATGGTTAGGCACTTATGATTCTGCAGAAGAAGCTGCAAGAGCATATGATGAAGCAGCTTGCTTGCTTCGTGGAGTCAACACTCGCAGAAACTTCTGGCCTTCTCAATATTCCCCTGCAAATCCAGTTCTTCCCAGAAAGATTGCTAATCTCATCCTTCTTAGGCTCAAAGCTAGAAACCATGCTTCTTCTGCAGTCTCTCATTTTCCCAGTAACCAAACAGATGTAGGAATAGAACCAAAACCCCCATTTGACAATTTCCCGGACAGGACAGACAATGGGTATTTCATTGATGGCTCCAATTATAGATCTGAGGAAACTACTAATGGTGGTGATTTTTGTTGTGGGAGTGATGGAGTCAGTTTTACTGAAAAGGGTTGTGGGAAGAAACTGAATTTGGATGTTGAAAAAGGAGTAGGGTTTGATGAAGAAAGTGAAGGAAGATTGGAGGAAAATGACATAGGTAACCTCATCCTTCTTAGGCTCAATGCAGCCAGGCACAATATTGCCTCTGATTCTGAAGTTACTCATTTTCCTTGCAACCAAACAGGATTGGAACCCCAATTGGACAATTTTCTGGAAGAGCCAGAAAGTAGTTTCTACACAAGTGGCGTAAGTTCTAGATCAGGAAACACAACTATTGTGGGTGAAGTAGGATCTGATGAAGAAAATTGTGGGAAGAAATTGAATTTGGATGGAGAAAACATCGAGATTACGAGGGAAAAAGAAGGGTCTGATGAGGAATCCGATATGGGGCTCATGGATTTCCAATTTATTGATAGTGTGGGATCTATTTGCTGTACTTCTTCTTCTTCTCCATTTGAGATAGCAGAGGAGATGATGGGACCAATGGAGGAAGAAGGATGTGAACATGAAGATGGGACTTTGGAGCCATCATTGCTCAGAGAAATGTTGAGGATGAAATATGAACGTAAAATCTCAGCTTGTCTTTATACCTTCGTTGGGGTTTCTGAGTGTTTGAGGCTGCAATTTGGATCAGAAAATGCAAAGGGGTTGGATAATTTTGAGTCTTCTTCTTCTTCTTCAATCCATTTGGGGCTTTCTTCTTGA 1269 0.4208 MVKMRSHSEEEMTRQGEGNIEWEEAATMAASLLRARRSARKRFIGVRQRPSGRWVAEIKDTIQNIRVWLGTYDSAEEAARAYDEAACLLRGVNTRRNFWPSQYSPANPVLPRKIANLILLRLKARNHASSAVSHFPSNQTDVGIEPKPPFDNFPDRTDNGYFIDGSNYRSEETTNGGDFCCGSDGVSFTEKGCGKKLNLDVEKGVGFDEESEGRLEENDIGNLILLRLNAARHNIASDSEVTHFPCNQTGLEPQLDNFLEEPESSFYTSGVSSRSGNTTIVGEVGSDEENCGKKLNLDGENIEITREKEGSDEESDMGLMDFQFIDSVGSICCTSSSSPFEIAEEMMGPMEEEGCEHEDGTLEPSLLREMLRMKYERKISACLYTFVGVSECLRLQFGSENAKGLDNFESSSSSSIHLGLSS 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1771 422 Gene3D AP2/ERF domain 41 99 IPR036955 GO:0003700|GO:0006355
Dere09g1771 422 FunFam ethylene-responsive transcription factor RAP2-11 41 100 - -
Dere09g1771 422 CDD AP2 41 98 IPR001471 GO:0003700|GO:0006355
Dere09g1771 422 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Dere09g1771 422 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Dere09g1771 422 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 8 262 - -
Dere09g1771 422 Pfam AP2 domain 42 91 IPR001471 GO:0003700|GO:0006355
Dere09g1771 422 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Dere09g1771 422 SUPERFAMILY DNA-binding domain 42 100 IPR016177 GO:0003677
Dere09g1771 422 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1771 Dere-ChrDere09 22740420 22741688 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1771 40 118 AP2-EREBP Transcription Factor Family AT5G19790 67.089 1.16e-29 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere09g1771 AP2 1.9e-14 CL0081