Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1765 ATGGCTTCATCTACCTTCACTTTACTTCCAGGCTCTGCTTTTCTTTCCCCTTCTTCTATATCCCACACCACAAGGGCCTTCTCTTTCCCAATTCCACCCAAGGGCCCACTTCTTCACCTCAGAAAACCTCTCTCGGCCAAATCTCTTGCTTCTGTCGAAATCGACACGTCATTGTCGCCGACGATTCAGACCTTCTGGCAGTGGCTATGGGAAGAAGGGGTTATCTCTCCGAAGACGCCGGTGAAGCCCGGAGTCGTGCCGGAAGGCCTCGGGCTGATTGCCCAGAGAAACATATCCCGAAGCGAGGTTGTTTTGCAGGTGCCCAAGAGGCTGTGGATAAACCCCGATGCGGTGGCGGCTTCGGAAATTGGGAGCGTGTGTAGCGGATTGAAGCCTTGGGTGTCGGTGGCTCTGTTCTTGATCAGGGAGAGGTCGAGGGATGAGTCTCTGTGGAAGCATTACTTCAAAATTCTTCCAGAGGTCACCGATTCGACTATATATTGGTCAGAGGAGGAGCTCTCTGAGCTTCAAGGTACTCAGCTTCTGAATACAACACTAGGCGTGAAAGAATACGTGCAGAATGAGTTTCTGAAACTGGAGGAAGAAATCATACTCCCCAATAAGAAGCTTTTCCCTTTCCCTATAACACTGGATGACTTCTTCTGGGCATTTGGAATTCTCAGATCAAGGGCATTTTCTCGCCTTCGCAACGAAAATCTAGTTGTGATTCCACTAGCGGACTTGATAAACCATAGTTCGAGGGTAACCACAGAAGATCATGCTTATGAAATTAAAGGAGCAGCAGGCCTTTTCTCTTGGGATTACCTGTTTTCTCTAAGGAGTCCCCTTTCTGTCAAAGCTGGGGAGCAGGTATATATCCAATATGATTTGAAGAAAAGTAATGCAGAGTTGGCTCTGGACTACGGCTTCATCGAACCAAATGCCAATAGGAATGCATATACCCTGACGCTACAAATATCTGAGTCAGACCCTTTTTTTGATGACAAACTAGACATTGCTGAGACCAATGGTTATGGGGAGACTGCATACTTTGACATCTTCTTCGATCGTCCACTTCCACCAGGACTGCTTCCATATCTGCGTCTGGTGGCTCTTGGCGGTACTGATGCTTTCCTCTTGGAAGCTTTATTCAGAAACTCTGTTTGGGGTCATCTGGAGTTGCCTGTGAGCCGTGACAATGAGGAGCTAATATGTCGAGTCGTTCAAGATGCCTGCAAATCTGCCCTTGCTGGTTATCATACCACCATTGAAGAGGATGAGAAGTTAAAAGAAGATAATCTAGATTCAAGGCTTGCAATTGCAGTGGGAATAAGAGAAGGAGAGAAGAAGGTGCTGCAGCAGATTGAAGGGGTCTTCAAGGAGAAAGAGTTGGAGTTGGATCAGTTAGAATATTATCAAGAAAGAAGGCTCAAGGATCTTGGTCTCTGCGGAGAAAATGGTGAGATCCTTGGGGACCTCAGCAAGTTCATGTAA 1494 0.4705 MASSTFTLLPGSAFLSPSSISHTTRAFSFPIPPKGPLLHLRKPLSAKSLASVEIDTSLSPTIQTFWQWLWEEGVISPKTPVKPGVVPEGLGLIAQRNISRSEVVLQVPKRLWINPDAVAASEIGSVCSGLKPWVSVALFLIRERSRDESLWKHYFKILPEVTDSTIYWSEEELSELQGTQLLNTTLGVKEYVQNEFLKLEEEIILPNKKLFPFPITLDDFFWAFGILRSRAFSRLRNENLVVIPLADLINHSSRVTTEDHAYEIKGAAGLFSWDYLFSLRSPLSVKAGEQVYIQYDLKKSNAELALDYGFIEPNANRNAYTLTLQISESDPFFDDKLDIAETNGYGETAYFDIFFDRPLPPGLLPYLRLVALGGTDAFLLEALFRNSVWGHLELPVSRDNEELICRVVQDACKSALAGYHTTIEEDEKLKEDNLDSRLAIAVGIREGEKKVLQQIEGVFKEKELELDQLEYYQERRLKDLGLCGENGEILGDLSKFM 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1765 497 Pfam SET domain 89 295 IPR001214 GO:0005515
Dere09g1765 497 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 58 310 - -
Dere09g1765 497 ProSiteProfiles Plant LSMT protein-lysine methyltransferase family profile. 3 495 IPR011192 GO:0009507|GO:0030785
Dere09g1765 497 ProSiteProfiles SET domain profile. 72 296 IPR001214 GO:0005515
Dere09g1765 497 PIRSF RMT_SET 1 496 IPR011192 GO:0009507|GO:0030785
Dere09g1765 497 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 60 443 - -
Dere09g1765 497 SMART set_7 77 302 IPR001214 GO:0005515
Dere09g1765 497 Pfam Rubisco LSMT substrate-binding 328 452 IPR015353 -
Dere09g1765 497 CDD SET_RBCMT 81 311 IPR044431 GO:0016279|GO:0018022
Dere09g1765 497 Gene3D set domain protein methyltransferase, domain 1 58 311 - -
Dere09g1765 497 Gene3D - 312 476 IPR036464 -
Dere09g1765 497 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 312 476 - -
Dere09g1765 497 SUPERFAMILY SET domain 59 317 IPR046341 -
Dere09g1765 497 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 319 490 IPR036464 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1765 Dere-ChrDere09 22663031 22667533 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1765 59 253 NAC Transcription Factor Family AT3G56570 27.941 8.14e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Dere09g1765 SET 7.9e-08 No_clan