Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1758 ATGGGTAGGTCACCATGCTGTGAGAAGGTAGGGTTGAAGAAAGGGCCTTGGACCCCTGAGGAAGACCAGAAGCTCATGGCTTACATCGAAGAACATGGCCATGGAAGCTGGCGTGCACTGCCTTCAAAAGCTGGACTTCAGAGATGTGGGAAGAGTTGCAGACTGAGGTGGACCAATTACCTGAGACCAGACATCAAACGAGGAAAGTTCAGCTTGCAGGAAGAGCGAACCATTATTCAACTTCATGCTCTTCTTGGAAACAGATGGTCAGCCATAGCAGCTCACTTGGCTAAGAGAACAGACAACGAGATCAAGAATTACTGGAACACCCACCTCAAGAAGAGGCTCACCAGAATGGGAATAGACCCCACCACACACAAACCTAAGACCGACCATCTCGGCTCGGCTGGCTCGACCCACTCCAAGGACGTCGCCAATCTCAGCCACATGGCTCAGTGGGAGAGCGCCCGCCTCGAAGCCGAAGCCAGACTAGTCAGAGAGTCCAAGTTCCAGCACGGCTCCCCCTCCTCAGTTCAACCGGCGCGGCTCGTCCTCAACAAAATCTCGGCTCAGCCGTCGTTACCGCCATGCCTCGACGTGCTCAAAGCATGGCATAACCAAAATTCATGGTCCCTGTCCACAGCTAAAGAGAAAAACACCAGAATGCATAACATGTACGCCTTGATGCTCTCCACCGCCGCCGACGACCTTGAATCTCCGACGTCCACCTTGAGCTTCCCGGAGCCACTTTTACCACCTGTCTCCACCACCGTCGGATTACCCAACGAAAGTTTACTTCCTCCAGCCACCACTGTTAGTTCCGTGGGGGTGGAGTCATGGGGGTGCTTGAACCAGGAGAAGCCGGAGATGGAGATCGGAGAAAGAAGAAGGACGAGTTTGCAAGATGATGACATTATGGTGGCGGTGGAAGCATTTATGGCAGAAAGGTCTAAGAAAGCACCAGAAGTACTGTCGTCCAACAGTATAATGGAAGCTTTGAATAACGACGATATTGATGTTCTGGCTTATGAATCCAATGAGAACTTAGCAGGTGTAGACGACCTGGGATTCATTGATAATGGCGATGGAAGCATGATTTGCGGTAACGTGAACTTTGAGGACAAGAATCATTACTGGAATAGCATATATAGTACTGAACTTGGTGAATGA 1170 0.5077 MGRSPCCEKVGLKKGPWTPEEDQKLMAYIEEHGHGSWRALPSKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEERTIIQLHALLGNRWSAIAAHLAKRTDNEIKNYWNTHLKKRLTRMGIDPTTHKPKTDHLGSAGSTHSKDVANLSHMAQWESARLEAEARLVRESKFQHGSPSSVQPARLVLNKISAQPSLPPCLDVLKAWHNQNSWSLSTAKEKNTRMHNMYALMLSTAADDLESPTSTLSFPEPLLPPVSTTVGLPNESLLPPATTVSSVGVESWGCLNQEKPEMEIGERRRTSLQDDDIMVAVEAFMAERSKKAPEVLSSNSIMEALNNDDIDVLAYESNENLAGVDDLGFIDNGDGSMICGNVNFEDKNHYWNSIYSTELGE 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1758 389 Gene3D - 13 66 - -
Dere09g1758 389 CDD SANT 69 112 IPR001005 -
Dere09g1758 389 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 213 - -
Dere09g1758 389 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Dere09g1758 389 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Dere09g1758 389 CDD SANT 16 61 IPR001005 -
Dere09g1758 389 Gene3D - 69 116 - -
Dere09g1758 389 FunFam MYB transcription factor 68 129 - -
Dere09g1758 389 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Dere09g1758 389 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Dere09g1758 389 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Dere09g1758 389 FunFam MYB-related transcription factor 13 66 - -
Dere09g1758 389 MobiDBLite consensus disorder prediction 121 141 - -
Dere09g1758 389 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Dere09g1758 389 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dere09g1758 389 SMART sant 13 63 IPR001005 -
Dere09g1758 389 SMART sant 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1758 Dere-ChrDere09 22567263 22569905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1758 1 263 MYB Transcription Factor Family AT3G01140 61.049 1.53e-105 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere09g1758 Myb_DNA-binding 3.8e-15 CL0123