Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1755 ATGGTAGCGGCAAAGATGATCATGGAAGAGACAATGCCACAGATAACAATGGCTGAAGAAGACCATATGCAACAGCTCAGATCTAAAGCAACAGAGCTACTCATAAGAGAAGAATGGAAGGACGCTGTCGAAGCATATTCATTCTTCATCGCTTTCTGCAAAAACCACATCTTTCAGACCCAAAACCATTCAGATCCAGATCAGCTTGAAAGGCTTCGAAAATCCCTCTGCTTAGCCCTTTCAAACAGAGCCGAAGCAAGATCGAGATTGAAAGAGTTTCGTTCAGCATTGGAAGATTGTGATTTGGCTTTGGAAATCGATAGTACTCATTTGAAGACTCTGATCTGCAAAGGTAAGATATTGCTCAATCTCAATATGTATTCCGCGGCTCTGGATTGCTTCAGAGTCGCTCTTCTTGATCCCCAGGCAAATGGGAACTCCGAAAACCTCAATGGGTACGTGGAGAAATGTAAAAAGCTCGACTTTCTCTCAAGAACTGGAGCTCTGGATCTTTCAGATTGGGTTTCAAATGGGTTTCGAGGCAAGTCTCCTGAACTTGCTGAATACGTTGGTTCTGTGCAGATCAGAAAATCTGAGATTAGTGGGCGTGGGTTGTTTGCAACTAAGAACATCGATGCAGGGACATTGCTTCTAGTCACAAGGGCAATAGCGATGGAAAGGAGCATATTGGGGGGGAAAGATTTAAGCGAGGAAGCTCAATTAGTTATGTGGAAGAATTTCATAGACAAAGTTTCAGACTTTGTTCGCAAATGTCGCAGAACAAGCAATTTGATTAGCAAATTGTCAAGTGGGGAAGATGAAGATTCACTTGAGGTTCCTGATATATCTCTTTATAAGCCAGAAACAGGGGAGAACAATAACAAGAACAAGCAATCTAGTGAGAATGAGAAGATTGATATGGGTAAGTTACTTGCCATATTGGATGTGAATTCTCTAACTGAGGATGCAGTTTCAGCCAACGTATTGGGGAAAAAGAACAATGATTACTATGGTGTCGGGTTATGGTTGCTACCTTCTTTCATCAACCATTCATGCTGTCCCAACGCACGGAGATTGCATGTGGGAGACTGTTTGATAGTTCATGCTTCTAAAGATATTAAAGCAGGTGAAGAGATTACCTTTACTTATTTTGATCCACTTTCTCCTTTGCACAAGCGTAGGGAGATGTCAATGACATGGGGAATTCATTGTAGATGTAAGAGATGCAGGTTTGAGTCAGAAATCTCGTGTAAACAAGAGATGAAAGAGATTGAGATTGGTCTTGAAAAAGGGATGGATGTGGGGGGTGCAGTGTACAAATTAGAAGAAGAGATGAAGAGATGGAAGGTGAGGGGAAAAGAGAAAGCCTATCTGAGGGCTTCATTTTGGGCTGCATATTCTGACACTTATAGGTCTGATAGGTGTATGAAGAGGTGGGGAAGGAGGATTCCAGCAATGGAAGTTGTGGTTTATAGCATCATAGATGTTATGGGAGGTGACGAGAGGCTGCTTAAGATTCTGATGGAGAAGCTGAAGAAAAATGAAGGTGGTGGACTTGTGGAAATGGAGAAAGCTTTGAAGCTGGCTAGAGATGTGTATGGGAGGGTGGTGAAAAAGCAAGCGATTAGGACTCTTCTTGAGTTCTGCGTTGGAACCAATGAATGA 1665 0.424 MVAAKMIMEETMPQITMAEEDHMQQLRSKATELLIREEWKDAVEAYSFFIAFCKNHIFQTQNHSDPDQLERLRKSLCLALSNRAEARSRLKEFRSALEDCDLALEIDSTHLKTLICKGKILLNLNMYSAALDCFRVALLDPQANGNSENLNGYVEKCKKLDFLSRTGALDLSDWVSNGFRGKSPELAEYVGSVQIRKSEISGRGLFATKNIDAGTLLLVTRAIAMERSILGGKDLSEEAQLVMWKNFIDKVSDFVRKCRRTSNLISKLSSGEDEDSLEVPDISLYKPETGENNNKNKQSSENEKIDMGKLLAILDVNSLTEDAVSANVLGKKNNDYYGVGLWLLPSFINHSCCPNARRLHVGDCLIVHASKDIKAGEEITFTYFDPLSPLHKRREMSMTWGIHCRCKRCRFESEISCKQEMKEIEIGLEKGMDVGGAVYKLEEEMKRWKVRGKEKAYLRASFWAAYSDTYRSDRCMKRWGRRIPAMEVVVYSIIDVMGGDERLLKILMEKLKKNEGGGLVEMEKALKLARDVYGRVVKKQAIRTLLEFCVGTNE 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1755 554 SMART set_7 191 390 IPR001214 GO:0005515
Dere09g1755 554 Pfam SET domain 202 383 IPR001214 GO:0005515
Dere09g1755 554 PANTHER TPR DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_5G12710) 17 545 - -
Dere09g1755 554 SMART tpr_5 23 56 IPR019734 GO:0005515
Dere09g1755 554 SMART tpr_5 111 143 IPR019734 GO:0005515
Dere09g1755 554 SMART tpr_5 77 110 IPR019734 GO:0005515
Dere09g1755 554 SUPERFAMILY TPR-like 21 139 IPR011990 GO:0005515
Dere09g1755 554 CDD SET_SMYD 311 409 - -
Dere09g1755 554 Gene3D SET domain 286 414 IPR046341 -
Dere09g1755 554 ProSiteProfiles SET domain profile. 191 384 IPR001214 GO:0005515
Dere09g1755 554 SUPERFAMILY SET domain 192 409 IPR046341 -
Dere09g1755 554 Gene3D Tetratricopeptide repeat domain 16 161 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1755 Dere-ChrDere09 22527962 22529626 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Dere09g1755 SET 1.4e-16 No_clan