Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1747 ATGAAAACAGAGGAGGCCCACAGACACAGAGTCCCGGCCCATGCTTCCCTCGCACCCCCTAAGGTCTATAAATTAGGTCACACCTCCTCGCATTTTCCTTCACTCCTCCTCTTCACATTGCCTCTCGCTAGTTGCTCTGCTCGCTTCGAAGTTTCAGTATCAAAGAAAATGGCTCTCATGGGGTTGCTCACAGTGGCTTTTCTCACAATGTTTTCCTCTGCTTACGGCTATGGCGGAGGCTGGACAAACGCTCATGCTACCTTTTATGGTGGAAGTGACGCGTCAGGGACAATGGGTGGGGCTTGTGGGTATGGGAATCTGTACAGCCAGGGCTATGGAACCAACACTGCTGCTCTGAGCACGGCTCTGTTCAACAGTGGGCTGAGCTGTGGGTCTTGCTACGAGATTAGGTGTGCCAATGATGGCAAGTGGTGCCTTCCTGGGTCCATTGTAGTCACAGCCACCAATTTCTGCCCTCCAAACAATGCCTTGCCCAATAATGCAGGAGGATGGTGTAATCCTCCACTCCAGCATTTTGACCTCGCTCAGCCTGTCTTCCTTCGCATTGCCCAGTACAAAGCCGGAATTGTTCCAGTGGCTTACAGAAGGGTGCCCTGCATCAGAAAGGGAGGTATCAGATTCACAATCAATGGGCATTCCTACTTCAACCTAGTCCTAATCACTAACGTAGGAGGTGCTGGTGATGTTCATTCTGCGGCCATCAAGGGATCCAGAACTGGATGGATGCCAATGTCAAGAAACTGGGGTCAAAACTGGCAGAGCAACAACTACCTTAACGGACAAAGCCTGTCCTTTAAGGTCACAACTAGTGATGGTCGCAGTGTGGTGTCCTATAATGTTGCTCCTGCAGGCTGGTCCTTTGGGCAAACCTTTACTGGGGCTCAGTTTCGCTGA 915 0.5115 MKTEEAHRHRVPAHASLAPPKVYKLGHTSSHFPSLLLFTLPLASCSARFEVSVSKKMALMGLLTVAFLTMFSSAYGYGGGWTNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNSGLSCGSCYEIRCANDGKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPLQHFDLAQPVFLRIAQYKAGIVPVAYRRVPCIRKGGIRFTINGHSYFNLVLITNVGGAGDVHSAAIKGSRTGWMPMSRNWGQNWQSNNYLNGQSLSFKVTTSDGRSVVSYNVAPAGWSFGQTFTGAQFR 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1747 304 SUPERFAMILY Barwin-like endoglucanases 80 229 IPR036908 -
Dere09g1747 304 PRINTS Expansin signature 186 199 IPR002963 GO:0009664
Dere09g1747 304 PRINTS Expansin signature 222 243 IPR002963 GO:0009664
Dere09g1747 304 PRINTS Expansin signature 286 302 IPR002963 GO:0009664
Dere09g1747 304 PRINTS Expansin signature 138 149 IPR002963 GO:0009664
Dere09g1747 304 PRINTS Expansin signature 210 222 IPR002963 GO:0009664
Dere09g1747 304 PRINTS Expansin signature 257 278 IPR002963 GO:0009664
Dere09g1747 304 PRINTS Expansin signature 111 125 IPR002963 GO:0009664
Dere09g1747 304 PRINTS Expansin signature 169 186 IPR002963 GO:0009664
Dere09g1747 304 PRINTS Expansin signature 150 160 IPR002963 GO:0009664
Dere09g1747 304 FunFam Expansin 211 303 - -
Dere09g1747 304 SUPERFAMILY PHL pollen allergen 208 300 IPR036749 -
Dere09g1747 304 Gene3D - 66 206 IPR036908 -
Dere09g1747 304 PANTHER EXPANSIN-A15 62 303 IPR002963 GO:0009664
Dere09g1747 304 FunFam Expansin 70 207 - -
Dere09g1747 304 Pfam Expansin C-terminal domain 212 289 IPR007117 -
Dere09g1747 304 SMART dpbb_1 116 201 IPR007112 -
Dere09g1747 304 Pfam Lytic transglycolase 116 201 IPR009009 -
Dere09g1747 304 Gene3D - 211 303 IPR036749 -
Dere09g1747 304 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 99 211 IPR007112 -
Dere09g1747 304 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 221 300 IPR007117 -
Dere09g1747 304 PRINTS Expansin/Lol pI family signature 286 300 IPR007118 GO:0005576
Dere09g1747 304 PRINTS Expansin/Lol pI family signature 98 116 IPR007118 GO:0005576
Dere09g1747 304 PRINTS Expansin/Lol pI family signature 120 138 IPR007118 GO:0005576
Dere09g1747 304 PRINTS Expansin/Lol pI family signature 80 95 IPR007118 GO:0005576
Dere09g1747 304 PRINTS Expansin/Lol pI family signature 248 262 IPR007118 GO:0005576
Dere09g1747 304 PRINTS Expansin/Lol pI family signature 194 210 IPR007118 GO:0005576
Dere09g1747 304 CDD DPBB_EXPA_N 80 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1747 Dere-ChrDere09 22425653 22427975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1747 56 304 Expansin Gene Family AT2G03090 81.526 1.03e-156 436