Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1746 ATGGTTAGTGCATGGAACGATGTAAGCGTATTGTGTATGGTTCGTAAAGGCACAAGTGAAATGAGATTGTTGATTGGTTGGGGAATCTCTAACGCTTCCCGGCTCCCGATTCTCGCGCTTGCCTCGATGACCGATTTTTCCGGTCACCCTATCGCGCGAACCGAAGCTATACGTAAGCTCACGGCTCTCCTTCTCTTCCTTTCAATCTGCCAATTAGCTCTACATTCTGTGCTTCCTCGCATTTTAGACCTTTGGATTGTGACCTTTCTAGTTACAAATTCGACTTCCTCGTCTGTGATGGGCAGGGTAAAGCTAAAAATAAAGAGGCTGGAGAATATCAATGGCCGCCAGGCAACTTTTGCTAAAAGAAAGAATGGAATCATAAAAAAGGCCATTGAGTTATCAATACTATGCGATATAGACATCATACTACTCATGTTCTCACCAAGTGGCAAGCCGTCATTGTGCAGAGGAAGACGCAGTAACATGGAGGAGGTTATTACAAAGTTTGCCCAATTAACTCCACAGGAAAGGGCAAAAAGGAAGTTGGAAAGTCTGGAAGCACTGAAGAAAACATTTAGGAAGTTAGATCATGATGTAAATATACAAGAATTTCTGGGTACAAGCCATTGGACTGAGCCTGATAAAATAAACAGTGTGGAACAATTGGGACAGATGGAAAATTCAATCCAGCAGTCACTTAATCACATTCGAACACGGAAGGAAAACATACAGAAGCAGCAACTTGTGAAATTGGAATGCACTAACCAGTTCAATGAGATGCAGATTCCATACAGTATGAGTGCTGAGCAACATTTTCAATCTCTTCCATGGATTCCTAACAATGACAGCCAACCTATAGTCTTACCTGAGGACTCAGACTTACTTCTCCACAAAGACCTTGAGTGCTCTGCAAGCTCTTCTTTTGGGAGTTATGCTAGTTATCTTGGCTCAAGTACAAAAACAGATATGTCTAATTCTGGGCAAGAAAATGGTGTCATCAGTGAACTGACCAGTACTGCTCCTCTGAGACTACAATTAGGAGGGCAGTTTCAATATGGATTGCCGTACAATTTCAATTTACTGAATGACACGAAGTTCCAACCAGCTATGGAAATGAATCCACATGAAAACCCTGTAGATTATCACGTTAATGGAAGCTTTGAAACCCCTAGACCTGGATATGACAGTAATCACCATGGATGGGCTTCCACATCAGGGTCTAGTGCTGTTACTTACTTTGATGAGCATTTGTATGCCCAGGCAAGTTCCCCTCAAGTGCAATTTGGCTTCTCATAG 1299 0.4242 MVSAWNDVSVLCMVRKGTSEMRLLIGWGISNASRLPILALASMTDFSGHPIARTEAIRKLTALLLFLSICQLALHSVLPRILDLWIVTFLVTNSTSSSVMGRVKLKIKRLENINGRQATFAKRKNGIIKKAIELSILCDIDIILLMFSPSGKPSLCRGRRSNMEEVITKFAQLTPQERAKRKLESLEALKKTFRKLDHDVNIQEFLGTSHWTEPDKINSVEQLGQMENSIQQSLNHIRTRKENIQKQQLVKLECTNQFNEMQIPYSMSAEQHFQSLPWIPNNDSQPIVLPEDSDLLLHKDLECSASSSFGSYASYLGSSTKTDMSNSGQENGVISELTSTAPLRLQLGGQFQYGLPYNFNLLNDTKFQPAMEMNPHENPVDYHVNGSFETPRPGYDSNHHGWASTSGSSAVTYFDEHLYAQASSPQVQFGFS 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1746 432 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 110 153 IPR002100 GO:0003677|GO:0046983
Dere09g1746 432 Coils Coil 176 196 - -
Dere09g1746 432 PRINTS MADS domain signature 102 122 IPR002100 GO:0003677|GO:0046983
Dere09g1746 432 PRINTS MADS domain signature 122 137 IPR002100 GO:0003677|GO:0046983
Dere09g1746 432 PRINTS MADS domain signature 137 158 IPR002100 GO:0003677|GO:0046983
Dere09g1746 432 SMART madsneu2 100 159 IPR002100 GO:0003677|GO:0046983
Dere09g1746 432 Gene3D - 114 195 IPR036879 GO:0003677|GO:0046983
Dere09g1746 432 PANTHER SERUM RESPONSE FACTOR HOMOLOG 102 270 - -
Dere09g1746 432 SUPERFAMILY SRF-like 101 192 IPR036879 GO:0003677|GO:0046983
Dere09g1746 432 FunFam Agamous-like MADS-box protein AGL30 113 195 - -
Dere09g1746 432 ProSiteProfiles MADS-box domain profile. 100 152 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1746 Dere-ChrDere09 22417434 22421403 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1746 100 425 Type I MADS-box Gene Family AT2G03060 45.385 8.76e-96 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Dere09g1746 SRF-TF 2.7e-17 No_clan