Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1744 ATGTCGGAGGTTAAAGAGCCGGTGATAAAGCTGTTTGGGAGGACGATTTCGCAGCCACTGGATCGCCCAGTCTCCACCAATGAGTCTTCTGGACCTGATCGTCCTTGGTCTTCGTCTGAAGATAGCTCTGGAAGGGATAAGGAACCATCAAGGATTGAACTCACCTCAGAACAAGACGATGGTGCTTCACATCAAATCACTGAGGATCTAAAGTCTCCCATGTCTTCACAAGTTTCTGAGAAACCTAATACCCCCTCTTCCTCAGCTCAAGGAGATAATTCTCTACTGAAACCCTCCAAAACTGGAGAGCGAAGTGAGGCAAGTACACTGCAAGAAAAACCTCTGAAGAAACCTGACAAAATACTTCCATGCCCCCGATGCAGTAGCATGGACACCAAATTCTGTTATTATAACAACTACAATGTCAATCAGCCCCGTCATTTCTGTAAGAACTGCCAAAGATACTGGACTGCTGGAGGAACTATGAGAAATGTGCCTGTAGGTGCTGGTCGCCGGAAGAACAAAAGCTCTTGCGCCTCAAATTATCGACACATCATGGTTCCTGAGTTACTTCTAACAGATAAATCCAATGCTGCCAATGGATTACATAATGCTGTTTTAGGAAATGGAGCAACTGTCTTGAACTTTGGCTCAGATTCTCCAATATGTGATTCCATGGCTTCCGTTTTGAACCTTACAGAGAAAACCCAAAATGATGTTTTGAATGGGCTTCACGTACCTGAGCAAAATATTATTTTTTATTCCGGTAGAGAGGACAATGGAGACGACCACTCAGTTGGAGCTTCTGTTACAACTTCAATTTCATCAGACAAGAGGGCTAATGCTGGTTCACAAGAATCAGGGTATAGAAGTTATGAAGGTTTCCCTCCTCAATTACAATGCATCCCAGGTTCCTCATGGCAATATCCATGGAATCCAGTGCAGTGGAATTCTCTCGTGCCTCCTCCATTTTGCCCACCTGGCTATCCAGTATCCTTCTTTCCTACGCCAACATACTGGGGTTGTACCTTACCTGTCTCCTGGAATAGACCATGTATTTCTCCACAATCTTCTGTGAACCACCCTTCCCCTAGCTCTGGCTCCAATTCACCTTCGCAGCGGAAACACTCTAGGGATGGAAGCATCATCATTCAAGCCAACTCTCAGAAAGAAAAGCCTGATATAGAGAGTAAGAACTCAGAAAATGGTGTCTTGATCCCCAAGACATTGAGAATTGATGATCCCAGTGAGGCTGCAATGAGTTCTATATGGTCAACACTAGGGATCAAGAATGAGAAGGGCAATTCCCTCAACGGTGGAGGAGGCCTTTTCAGGGCATTTCCATCTAAGGGAGATGACAAAAATCATCATCACAGCGCATCACCGGTGCTGCAAGCCAACCCAGCAGCTTTGTCGCGGTCTCTTACTTTCCATGAGCAGCAGATCTAA 1449 0.4534 MSEVKEPVIKLFGRTISQPLDRPVSTNESSGPDRPWSSSEDSSGRDKEPSRIELTSEQDDGASHQITEDLKSPMSSQVSEKPNTPSSSAQGDNSLLKPSKTGERSEASTLQEKPLKKPDKILPCPRCSSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSCASNYRHIMVPELLLTDKSNAANGLHNAVLGNGATVLNFGSDSPICDSMASVLNLTEKTQNDVLNGLHVPEQNIIFYSGREDNGDDHSVGASVTTSISSDKRANAGSQESGYRSYEGFPPQLQCIPGSSWQYPWNPVQWNSLVPPPFCPPGYPVSFFPTPTYWGCTLPVSWNRPCISPQSSVNHPSPSSGSNSPSQRKHSRDGSIIIQANSQKEKPDIESKNSENGVLIPKTLRIDDPSEAAMSSIWSTLGIKNEKGNSLNGGGGLFRAFPSKGDDKNHHHSASPVLQANPAALSRSLTFHEQQI 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1744 482 MobiDBLite consensus disorder prediction 1 122 - -
Dere09g1744 482 MobiDBLite consensus disorder prediction 265 288 - -
Dere09g1744 482 MobiDBLite consensus disorder prediction 19 38 - -
Dere09g1744 482 ProSitePatterns Zinc finger Dof-type signature. 124 160 IPR003851 GO:0003677|GO:0006355
Dere09g1744 482 MobiDBLite consensus disorder prediction 68 105 - -
Dere09g1744 482 MobiDBLite consensus disorder prediction 39 66 - -
Dere09g1744 482 MobiDBLite consensus disorder prediction 256 289 - -
Dere09g1744 482 Pfam Dof domain, zinc finger 119 176 IPR003851 GO:0003677|GO:0006355
Dere09g1744 482 ProSiteProfiles Zinc finger Dof-type profile. 122 176 IPR003851 GO:0003677|GO:0006355
Dere09g1744 482 PANTHER CYCLIC DOF FACTOR 2 1 480 IPR045174 GO:0003700|GO:0006355
Dere09g1744 482 MobiDBLite consensus disorder prediction 106 120 - -
Dere09g1744 482 MobiDBLite consensus disorder prediction 355 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1744 Dere-ChrDere09 22366227 22369165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1744 1 480 C2C2-Dof Transcription Factor Family AT3G47500 41.818 7.80e-91 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Dere09g1744 zf-Dof 2.9e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g1744 09 22366227 22369165 Dere03g0932 03 14252726 14254826 CCT