Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere09g1743 ATGGATCTGCAAAACATGCAAAACCAAAGCACGCATTTGGTTCTGTCCTCTGATGCCAAGCCAAGGCTGAAATGGACTCCTGAGCTTCACCAGCGGTTCTTAGAGGCTGTTAATCAGCTTGGAGGGCCAGAAAAGGCAACCCCAAAGAGTCTTATGAGGGTGATGCGGATTCCAGGACTCACCTTGTACCACTTGAAGAGCCATTTACAGAAATTCAGACTCGGGAAAAGCCCACAGCCAGAAACCTATGATGATAAACAAGAAGATTATAGAGAAACCCATAGCAGTGATGATCACTGTAGCAAGGAAATCAGTGTGGGGACCCAGAATCAGATGACTGAAAGCCAGCAGATTGCTCAAGCTCTCCAAATGCAAATGGAAGTGCAGAAAAAGCTTTATGAACAAATTGAGGTGCAAAAGCATTTACAGCTCCGGATTGAAGCTCAGGGGAAGTACTTACAGTCAGTGCTATTGAAAGCTCAGGAAGCACTTGCTGGATACAGTTCTTCTGCTTCTGGTGTAGAACTAGCAAAAGCTGAACTCTCTCAACTAGTCTCAATAATCAACAATGGCTGCCCGAGTTCCCCCATTTCAGAACTGACAGAAACAAGAGTGTTCAGTTTGAAAGATGGAGAGAGGAAGCAAAACAGAGGGACTATGTGTTCGTTGGAGAGCTCCTTGACATCTTCTGAAAGCTCAGGGAGAAAGGAAGAGGACCCTCAAAAGTCTGATAGAACTTCAGTTGAATTGCAATTAATGACTGTTCACCCAGAAGATGATAAAGCATTGAATGGTGAGACAGAGAATGAGTCTTGTGGGAGAAAGAGGAGCGGAGCCACTGATTCTGATGGTTACTGCGTTGAGCAACCAATCAGTAAAAGATGTGGCTACAAGTTGAGAAAACCCGAGTTGTCTGGACTCGACTTGAACAGCAAATATCAGAGTGACATTGAATCAGACTCGAAGAAAATAGACCTGAATAGCAGTTCAATGAACAATTCTAGCTATTTGGAACCTTGA 1020 0.4412 MDLQNMQNQSTHLVLSSDAKPRLKWTPELHQRFLEAVNQLGGPEKATPKSLMRVMRIPGLTLYHLKSHLQKFRLGKSPQPETYDDKQEDYRETHSSDDHCSKEISVGTQNQMTESQQIAQALQMQMEVQKKLYEQIEVQKHLQLRIEAQGKYLQSVLLKAQEALAGYSSSASGVELAKAELSQLVSIINNGCPSSPISELTETRVFSLKDGERKQNRGTMCSLESSLTSSESSGRKEEDPQKSDRTSVELQLMTVHPEDDKALNGETENESCGRKRSGATDSDGYCVEQPISKRCGYKLRKPELSGLDLNSKYQSDIESDSKKIDLNSSSMNNSSYLEP 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere09g1743 339 MobiDBLite consensus disorder prediction 306 339 - -
Dere09g1743 339 Gene3D - 19 77 - -
Dere09g1743 339 MobiDBLite consensus disorder prediction 74 101 - -
Dere09g1743 339 NCBIfam myb-like DNA-binding domain, SHAQKYF class 20 75 IPR006447 GO:0003677
Dere09g1743 339 MobiDBLite consensus disorder prediction 211 285 - -
Dere09g1743 339 Pfam Myb-like DNA-binding domain 22 71 IPR001005 -
Dere09g1743 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 77 IPR017930 -
Dere09g1743 339 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 5 257 IPR044848 GO:0003700
Dere09g1743 339 Coils Coil 119 139 - -
Dere09g1743 339 MobiDBLite consensus disorder prediction 78 101 - -
Dere09g1743 339 SUPERFAMILY Homeodomain-like 19 75 IPR009057 -
Dere09g1743 339 FunFam Myb family transcription factor 19 77 - -
Dere09g1743 339 Pfam MYB-CC type transfactor, LHEQLE motif 117 162 IPR025756 -
Dere09g1743 339 MobiDBLite consensus disorder prediction 254 277 - -
Dere09g1743 339 MobiDBLite consensus disorder prediction 231 245 - -
Dere09g1743 339 MobiDBLite consensus disorder prediction 324 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere09g1743 Dere-ChrDere09 22347384 22348855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere09g1743 13 319 G2-like Transcription Factor Family AT1G69580 51.534 2.72e-83 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Dere09g1743 Myb_DNA-binding 1.2e-06 CL0123